RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 RAD18Q9NS91 495 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 ZNHIT2Q9UHR6 403 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 IGHV1OR21-1A0A087WYE8 117 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 IGHV5-10-1A0A0J9YXX1 117 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 PPM1DO15297 605 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 MTA2O94776 668 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 MMP2P08253 660 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 ETV5P41161 510 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 SLC1A1P43005 524 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 LIMK2P53671 638 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 QPCTQ16769 361 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 MANEAQ5SRI9 462 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 LRRC38Q5VT99 294 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 LRRN4Q8WUT4 740 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 AHCYL2Q96HN2 611 aaKnown RBP14.63□□□□□ -0.07
CBX3-203ENST00000409747 CCDC74BQ96LY2 380 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 SLC38A3Q99624 504 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 DDX56Q9NY93 547 aaKnown RBP14.63□□□□□ -0.07
CBX3-203ENST00000409747 PLEKHM1Q9Y4G2 1056 aa14.63□□□□□ -0.07
CBX3-203ENST00000409747 ZFC3H1O60293 1989 aaKnown RBP14.63□□□□□ -0.07
CBX3-203ENST00000409747 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.62□□□□□ -0.07
CBX3-203ENST00000409747 AGRPO00253 132 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 DUX1O43812 170 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 DNAJC6O75061 913 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 MFAP3LO75121 409 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 KRT1P04264 644 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 PPM1FP49593 454 aaPredicted RBP14.62□□□□□ -0.07
CBX3-203ENST00000409747 ZBTB17Q13105 803 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 TGIF1Q15583 401 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 SLC14A2Q15849 920 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 KIAA1614Q5VZ46 1190 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 VSTM4Q8IW00 320 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 RHOT1Q8IXI2 618 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 SFRP1Q8N474 314 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 ZSCAN1Q8NBB4 408 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 AVL9Q8NBF6 648 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 AGBL5Q8NDL9 886 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 OR10G6Q8NH81 332 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 SLC37A2Q8TED4 501 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 SH3KBP1Q96B97 665 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 SGF29Q96ES7 293 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 HERPUD2Q9BSE4 406 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 NHEJ1Q9H9Q4 299 aaPredicted RBP14.62□□□□□ -0.07
CBX3-203ENST00000409747 FOXJ2Q9P0K8 574 aa14.62□□□□□ -0.07
CBX3-203ENST00000409747 GPR89AB7ZAQ6 455 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 C9orf172C9J069 976 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 STMND1H3BQB6 276 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 ATP1A1P05023 1023 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 GPR89BP0CG08 455 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 THRAP10827 490 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 CSTF2P33240 577 aaKnown RBP eCLIP14.61□□□□□ -0.071e-6■□□□□ 10.5
CBX3-203ENST00000409747 DCDC1P59894 354 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 ZNF569Q5MCW4 686 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 XKR5Q6UX68 686 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 ZNF574Q6ZN55 896 aaPredicted RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 BZW1Q7L1Q6 419 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 CHST15Q7LFX5 561 aaPredicted RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 NT5DC3Q86UY8 548 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 RFX6Q8HWS3 928 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 CNGA4Q8IV77 575 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 CNTD1Q8N815 330 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 RCBTB1Q8NDN9 531 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 IMP4Q96G21 291 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 MED8Q96G25 268 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 OLFM3Q96PB7 478 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 TAAR9Q96RI9 348 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 SRPK1Q96SB4 655 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 ZSCAN5AQ9BUG6 496 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 SLC25A51Q9H1U9 297 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 CARD9Q9H257 536 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 ZFYVE1Q9HBF4 777 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 SPTLC3Q9NUV7 552 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 INTUQ9ULD6 942 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 CNOT6Q9ULM6 557 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 C3orf70A6NLC5 250 aaPredicted RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 FADS2P1A8MWK0 482 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 PLA2G2AP14555 144 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 ATP1A2P50993 1020 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 HHEXQ03014 270 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 LY6DQ14210 128 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 GALNT3Q14435 633 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 NKAIN2Q5VXU1 208 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 PDPK2PQ6A1A2 396 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 TMEM71Q6P5X7 295 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 LYSMD3Q7Z3D4 306 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 SLC9B2Q86UD5 537 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 ZFAND4Q86XD8 727 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 DTX1Q86Y01 620 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 PHYKPLQ8IUZ5 450 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 AGAP3Q96P47 875 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 WDR24Q96S15 920 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 SPATA16Q9BXB7 569 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 MAGEE1Q9HCI5 957 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 SARS2Q9NP81 518 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 NFKBIL1Q9UBC1 381 aaPredicted RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 PCDHGA3Q9Y5H0 932 aa14.61□□□□□ -0.07
CBX3-203ENST00000409747 OAS3Q9Y6K5 1087 aaKnown RBP14.61□□□□□ -0.07
CBX3-203ENST00000409747 HELZ2Q9BYK8 2649 aaKnown RBP14.6□□□□□ -0.07
CBX3-203ENST00000409747 KIR2DS5A0A0G2JLQ3 304 aa14.6□□□□□ -0.07
CBX3-203ENST00000409747 A0A0G2JNG1 304 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms