RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 APOOQ9BUR5 198 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 ROPN1BQ9BZX4 212 aaPredicted RBP9.15□□□□□ -0.95
UPF2-202ENST00000357604 ROPN1Q9HAT0 212 aaPredicted RBP9.15□□□□□ -0.95
UPF2-202ENST00000357604 PCDHB11Q9Y5F2 797 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 TCRBV5S1A1TA0A578 114 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CBSLP0DN79 551 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CHRNB1P11230 501 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CBSP35520 551 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 FSCBQ5H9T9 825 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 TMEM220Q6QAJ8 160 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 SERPINA9Q86WD7 417 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CBARPQ8N350 705 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 RAB3IL1Q8TBN0 382 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 ALG3Q92685 438 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 NAT6Q93015 286 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 NECAB3Q96P71 396 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 RPP25Q9BUL9 199 aaKnown RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 EPB41L1Q9H4G0 881 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 MATN2O00339 956 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 LIN7AO14910 233 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 DYRK3O43781 588 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 RECQL5O94762 991 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 GFAPP14136 432 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 TIMP2P16035 220 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 ZNF252P-AS1Q0IIN9 211 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 MAP7Q14244 749 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 NFATC4Q14934 902 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CYP1B1Q16678 543 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CEP85LQ5SZL2 805 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 MANEALQ5VSG8 457 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 MFSD2AQ8NA29 543 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 OR2A12Q8NGT7 310 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 SLC35B2Q8TB61 432 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 SCRN2Q96FV2 425 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 FAM96AQ9H5X1 160 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 SPATS2LQ9NUQ6 558 aaKnown RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 RIMKLBQ9ULI2 386 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 GP5P40197 560 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 IL2P60568 153 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 LPAL2Q16609 132 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 PAGE2BQ5JRK9 111 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 DPY19L2P1Q6NXN4 242 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 FBXO38Q6PIJ6 1188 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 LYSMD3Q7Z3D4 306 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 ETFBKMTQ8IXQ9 262 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 HM13Q8TCT9 377 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 DCDC2Q9UHG0 476 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 CPED1A4D0V7 1026 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 PIM1P11309 404 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 ATP1B2P14415 290 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 GLDCP23378 1020 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 SRP54P61011 504 aaKnown RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 KIAA0930Q6ICG6 404 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 AADACL2Q6P093 401 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 TMEFF1Q8IYR6 380 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 LRRC1Q9BTT6 524 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 TMEM30AQ9NV96 361 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 SIRPGQ9P1W8 387 aa9.14□□□□□ -0.95
UPF2-202ENST00000357604 COL4A4P53420 1690 aaPredicted RBP9.14□□□□□ -0.95
UPF2-202ENST00000357604 K7EQS6 105 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 PRMT5O14744 637 aaPredicted RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 DUX1O43812 170 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ESR1P03372 595 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 SP9P0CG40 484 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 TCF4P15884 667 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ACTR1BP42025 376 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ACTR1AP61163 376 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 LRIG3Q6UXM1 1119 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 Q6ZSR6 202 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 KIAA0408Q6ZU52 694 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 BMP8AQ7Z5Y6 402 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 EIF1ADQ8N9N8 165 aaKnown RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 RERGQ96A58 199 aaPredicted RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 COPS7BQ9H9Q2 264 aaPredicted RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 FADS3Q9Y5Q0 445 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 K7ERQ8 282 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 RASSF9O75901 435 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 NDUFA9Q16795 377 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 IMPG1Q17R60 797 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 C9orf64Q5T6V5 341 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 SLC22A9Q8IVM8 553 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 PRELID2Q8N945 189 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 SPATA22Q8NHS9 363 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ARRDC3Q96B67 414 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 OLFM3Q96PB7 478 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 PPM1HQ9ULR3 514 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 NLRC5Q86WI3 1866 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 GSAPA4D1B5 854 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 PRRT4C9JH25 899 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 TLR4O00206 839 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 CMPK1P30085 196 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 ATP6V0D1P61421 351 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 IL9RQ01113 521 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 POU4F1Q01851 419 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 CLDN23Q96B33 292 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 MRGPRX1Q96LB2 322 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 GIMAP4Q9NUV9 329 aa9.13□□□□□ -0.95
UPF2-202ENST00000357604 TSR3Q9UJK0 312 aaKnown RBP9.13□□□□□ -0.95
UPF2-202ENST00000357604 GPR37L1O60883 481 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms