RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 WISP3O95389 354 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 EPOP01588 193 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 HGFP14210 728 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 LPOP22079 712 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 DIO3P55073 304 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 CLCQ05315 142 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 GK3PQ14409 553 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 NRF1Q16656 503 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PLA2G4EQ3MJ16 856 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 OR52E8Q6IFG1 317 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 SLC8B1Q6J4K2 584 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 CXorf57Q6NSI4 855 aaKnown RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 FBXL19Q6PCT2 694 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 FAM151BQ6UXP7 276 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 IFNEQ86WN2 208 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 FAM110BQ8TC76 370 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 DCUN1D1Q96GG9 259 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 RPL10LQ96L21 214 aaKnown RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 GPR63Q9BZJ6 419 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 TUBB1Q9H4B7 451 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 A0A0J9YYE9 177 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 COL6A1P12109 1028 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 ZXDBP98169 803 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PLIN5Q00G26 463 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 FOLH1Q04609 750 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 ACVR1Q04771 509 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 STX5Q13190 355 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 CDH18Q13634 790 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 AFTPHQ6ULP2 937 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 LARP4Q71RC2 724 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 DNAJB7Q7Z6W7 309 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 AMIGO2Q86SJ2 522 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PXYLP1Q8TE99 480 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 FATE1Q969F0 183 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 LINGO1Q96FE5 620 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 TTLL2Q9BWV7 592 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 PIF1Q9H611 641 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 CD274Q9NZQ7 290 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 EGFL7Q9UHF1 273 aa10.29□□□□□ -0.76
LIMA1-201ENST00000341247 TRMT6Q9UJA5 497 aaKnown RBP10.29□□□□□ -0.76
LIMA1-201ENST00000341247 NRP2O60462 931 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 RNASEH2AO75792 299 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CD160O95971 181 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CSKP41240 450 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CYP4F8P98187 520 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 TAF1AQ15573 450 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 UGT3A2Q3SY77 523 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 LYSMD3Q7Z3D4 306 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 RETREG3Q86VR2 466 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 FUNDC1Q8IVP5 155 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF461Q8TAF7 563 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 STAG3L4Q8TBR4 150 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 NUDT8Q8WV74 236 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CNBD2Q96M20 576 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF599Q96NL3 588 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 TNKS2Q9H2K2 1166 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 EVLQ9UI08 416 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 EIF2B4Q9UI10 523 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 ILVBLA1L0T0 632 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 SMAD6O43541 496 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 TPST1O60507 370 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 GUCA1CO95843 209 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 UQCRBP14927 111 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CR2P20023 1033 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 OGNP20774 298 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 APLP1P51693 650 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CCNHP51946 323 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 HERC3Q15034 1050 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 MAP7D1Q3KQU3 841 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 FOXB2Q5VYV0 432 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CHSY3Q70JA7 882 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 APCDD1Q8J025 514 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 VPS33AQ96AX1 596 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 PPWD1Q96BP3 646 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 L3HYPDHQ96EM0 354 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 TMEM169Q96HH4 297 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 BIRC8Q96P09 236 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 GBP5Q96PP8 586 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 SMG9Q9H0W8 520 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 VCX3BQ9H321 246 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CHD5Q8TDI0 1954 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 TRIM38O00635 465 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 HOXA2O43364 376 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 KATNA1O75449 491 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 BAIAP3O94812 1187 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 PKMP14618 531 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 SATB1Q01826 763 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 LRP8Q14114 963 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 FUT11Q495W5 492 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 C6orf52Q5T4I8 152 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 ADGRG6Q86SQ4 1221 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CLDN19Q8N6F1 224 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CDYL2Q8N8U2 506 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 GPR150Q8NGU9 434 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 DDI1Q8WTU0 396 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 FUBP1Q96AE4 644 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 SYTL2Q9HCH5 934 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 AFF4Q9UHB7 1163 aaKnown RBP10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CROTQ9UKG9 612 aa10.28□□□□□ -0.76
LIMA1-201ENST00000341247 CLEC4EQ9ULY5 219 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms