RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CORO1AP31146 461 aaKnown RBP12.58□□□□□ -0.4
SDC3-201ENST00000336798 MNDAP41218 407 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 SEMG2Q02383 582 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CARTPTQ16568 116 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 ADAMTSL2Q86TH1 951 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 SLC43A3Q8NBI5 491 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 EBPLQ9BY08 206 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 SLC28A3Q9HAS3 691 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 EMC3Q9P0I2 261 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 HCN1O60741 890 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 FUT4P22083 530 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CTSKP43235 329 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 ANXA8L1Q5VT79 327 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 SULT1C3Q6IMI6 304 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 RBM44Q6ZP01 1051 aaKnown RBP12.58□□□□□ -0.4
SDC3-201ENST00000336798 NET1Q7Z628 596 aaPredicted RBP12.58□□□□□ -0.4
SDC3-201ENST00000336798 GPR65Q8IYL9 337 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CPA6Q8N4T0 437 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 B3GALT6Q96L58 329 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 SAR1AQ9NR31 198 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 GRM6O15303 877 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 ANPEPP15144 967 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 HOXC12P31275 282 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CTSOP43234 321 aaPredicted RBP12.58□□□□□ -0.4
SDC3-201ENST00000336798 PGDP52209 483 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 C2orf80Q0P641 193 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 TAF10Q12962 218 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 MAP2K5Q13163 448 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 MYBPC3Q14896 1274 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CREG2Q8IUH2 290 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 C7orf61Q8IZ16 206 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 AMER2Q8N7J2 671 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 IL31RAQ8NI17 732 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 FAM110BQ8TC76 370 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 AENQ8WTP8 325 aaKnown RBP12.58□□□□□ -0.4
SDC3-201ENST00000336798 DLG3Q92796 817 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 KAZALD1Q96I82 304 aa12.58□□□□□ -0.4
SDC3-201ENST00000336798 CEP152O94986 1710 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 SLC22A3O75751 556 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 CYP1A2P05177 515 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 MAPK8P45983 427 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 WNT3AP56704 352 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 RIPK1Q13546 671 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 FRRS1Q6ZNA5 592 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 SPPL2CQ8IUH8 684 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 FAM129BQ96TA1 746 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 AGO3Q9H9G7 860 aaKnown RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 SEC14L3Q9UDX4 400 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 ING4Q9UNL4 249 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.57□□□□□ -0.4
SDC3-201ENST00000336798 DGKBQ9Y6T7 804 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 ASTN1O14525 1302 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 GLYATL1P3A0A0U1RQE8 302 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 DHRS12A0PJE2 317 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 AP2A2O94973 939 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 MT-ND1P03886 318 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 PRKAR1AP10644 381 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 RPL3P39023 403 aaKnown RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 OR4K2Q8NGD2 314 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 ALG2Q9H553 416 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 SEMA3GQ9NS98 782 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 FAM198AQ9UFP1 575 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 MRPS33Q9Y291 106 aaKnown RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 ADGRB3O60242 1522 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 FPGTO14772 594 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 TSPAN4O14817 238 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 MAFO75444 373 aaPredicted RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 FGBP02675 491 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 MPSTP25325 297 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 TGFBR2P37173 567 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 PSEN1P49768 467 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 KCNJ2P63252 427 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 HSPB3Q12988 150 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 GRIK5Q16478 980 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 PLEKHG4Q58EX7 1191 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 CLIP4Q8N3C7 705 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 SLC4A11Q8NBS3 891 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 TCF25Q9BQ70 676 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 FAM105AQ9NUU6 356 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 AP3M1Q9Y2T2 418 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 BCORL1Q5H9F3 1711 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 RSL1D1O76021 490 aaKnown RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 SERPINA1P01009 418 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 CAPN13Q6MZZ7 669 aaPredicted RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 SMARCD3Q6STE5 483 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 ATAD1Q8NBU5 361 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 WDR55Q9H6Y2 383 aaPredicted RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 TRNAU1APQ9NX07 287 aaKnown RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 IRAK3Q9Y616 596 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 CBFA2T3O75081 653 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 DNASE1L1P49184 302 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 SLC7A2P52569 658 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 BEND5Q7L4P6 421 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 GALNT6Q8NCL4 622 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 RP9Q8TA86 221 aaKnown RBP12.57□□□□□ -0.4
SDC3-201ENST00000336798 CKAP2Q8WWK9 683 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 PPM1MQ96MI6 270 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 TTPALQ9BTX7 342 aa12.57□□□□□ -0.4
SDC3-201ENST00000336798 FTHL17Q9BXU8 183 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms