RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RABGGTBP53611 331 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 CCL23P55773 120 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 RPL38P63173 70 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 KRT73Q86Y46 540 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 ZNF567Q8N184 647 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 CMASQ8NFW8 434 aaPredicted RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 C17orf50Q8WW18 174 aa15.31■□□□□ 0.04
SHH-201ENST00000297261 CNOT6Q9ULM6 557 aaKnown RBP15.31■□□□□ 0.04
SHH-201ENST00000297261 A0A0J9YVX5 310 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 GCATO75600 419 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 TSPAN9O75954 239 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 MTHFD1P11586 935 aaKnown RBP15.3■□□□□ 0.04
SHH-201ENST00000297261 PROZP22891 400 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 TRAP1Q12931 704 aaKnown RBP15.3■□□□□ 0.04
SHH-201ENST00000297261 DENND6AQ8IWF6 608 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 LEMD2Q8NC56 503 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 CLEC4CQ8WTT0 213 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 ASB9Q96DX5 294 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 RNFT2Q96EX2 444 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 TRMOQ9BU70 441 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 HIPK3Q9H422 1215 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 IKZF3Q9UKT9 509 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 PDE10AQ9Y233 779 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 PMF1-BGLAPU3KQ54 211 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 SLC12A8A0AV02 714 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 H0YC42 278 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 H7C4K7 107 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 NBNO60934 754 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 FKTNO75072 461 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 SLC26A3P40879 764 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 TAS2R39P59534 338 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 PPP1R8Q12972 351 aaKnown RBP15.3■□□□□ 0.04
SHH-201ENST00000297261 SYTL3Q4VX76 610 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 FAM9CQ8IZT9 166 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 CENPIQ92674 756 aaPredicted RBP15.3■□□□□ 0.04
SHH-201ENST00000297261 LMCD1Q9NZU5 365 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 IFT80Q9P2H3 777 aaPredicted RBP15.3■□□□□ 0.04
SHH-201ENST00000297261 TBC1D30Q9Y2I9 924 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 COPG1Q9Y678 874 aaKnown RBP15.3■□□□□ 0.04
SHH-201ENST00000297261 RAMP2O60895 175 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 RAB15P59190 212 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 ARPC4P59998 168 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 IL2P60568 153 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 CCNIQ14094 377 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 SDHAF4Q5VUM1 108 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 P2RY8Q86VZ1 359 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 RHOBTB2Q9BYZ6 727 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 CNTN3Q9P232 1028 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 PTCH2Q9Y6C5 1203 aa15.3■□□□□ 0.04
SHH-201ENST00000297261 SLC10A3P09131 477 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 MAPK1P28482 360 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CCND3P30281 292 aaPredicted RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 TALDO1P37837 337 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 LZTR1Q8N653 840 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 FNDC8Q8TC99 324 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 KCTD15Q96SI1 283 aaPredicted RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 SYT11Q9BT88 431 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 SPRTNQ9H040 489 aaPredicted RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 DTLQ9NZJ0 730 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 IGSF9Q9P2J2 1179 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 MOSPD1Q9UJG1 213 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 ZNF221Q9UK13 617 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 MYBPHLA2RUH7 354 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 BBIP1A8MTZ0 92 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 H0Y858 1186 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 PSMD11O00231 422 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CCL22O00626 93 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 GPIP06744 558 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 AZGP1P25311 298 aaKnown RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 NMBRP28336 390 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 ZNF132P52740 706 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 ALDH6A1Q02252 535 aaKnown RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 MED22Q15528 200 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 PTPRNQ16849 979 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 TEX44Q53QW1 395 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 GPR158Q5T848 1215 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 DCLRE1AQ6PJP8 1040 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 SLC26A9Q7LBE3 791 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 ADCK2Q7Z695 626 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 TTC30BQ8N4P2 665 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 UROC1Q96N76 676 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 QKIQ96PU8 341 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHH-201ENST00000297261 CCDC106Q9BWC9 280 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 ADAMTS10Q9H324 1103 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 FLRT1Q9NZU1 646 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CCDC182A6NF36 153 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CBX4O00257 560 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 EIF2S1P05198 315 aaKnown RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 GRK4P32298 578 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 MAGEA8P43361 318 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 ELAVL2Q12926 359 aaKnown RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 MAD2L1Q13257 205 aaPredicted RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 IKBKEQ14164 716 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 FGD3Q5JSP0 725 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 THOC7Q6I9Y2 204 aaKnown RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 PDPRQ8NCN5 879 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 OR9I1Q8NGQ6 314 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 SPATA22Q8NHS9 363 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 TRIB2Q92519 343 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CLEC4MQ9H2X3 399 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms