RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 OXTRP30559 389 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 FMO3P31513 532 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 OAZ1P54368 228 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 GRB7Q14451 532 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 SPANXN2Q5MJ10 180 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 FKBP1CQ5VVH2 108 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 THOC7Q6I9Y2 204 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 EFL1Q7Z2Z2 1120 aaKnown RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 TMEM135Q86UB9 458 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 ABI1Q8IZP0 508 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 OR2T12Q8NG77 320 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 MCOLN3Q8TDD5 553 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 PROX1Q92786 737 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 TRMOQ9BU70 441 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 NPLQ9BXD5 320 aaPredicted RBP11.01□□□□□ -0.65
CLN3-244ENST00000636147 IMPAD1Q9NX62 359 aa11.01□□□□□ -0.65
CLN3-244ENST00000636147 ZCWPW2A0A1B0GU75 182 aa11□□□□□ -0.65
CLN3-244ENST00000636147 NDUFB5O43674 189 aa11□□□□□ -0.65
CLN3-244ENST00000636147 XPNPEP2O43895 674 aa11□□□□□ -0.65
CLN3-244ENST00000636147 STBD1O95210 358 aa11□□□□□ -0.65
CLN3-244ENST00000636147 CYP2B6P20813 491 aa11□□□□□ -0.65
CLN3-244ENST00000636147 OPRL1P41146 370 aa11□□□□□ -0.65
CLN3-244ENST00000636147 POLR2JP52435 117 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 SLC13A2Q13183 592 aa11□□□□□ -0.65
CLN3-244ENST00000636147 DDX39BQ13838 428 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 RFTN1Q14699 578 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 TMEM236Q5W0B7 351 aa11□□□□□ -0.65
CLN3-244ENST00000636147 ADHFE1Q8IWW8 467 aa11□□□□□ -0.65
CLN3-244ENST00000636147 OR6J1Q8NGC5 347 aa11□□□□□ -0.65
CLN3-244ENST00000636147 PCYT2Q99447 389 aa11□□□□□ -0.65
CLN3-244ENST00000636147 TRMT13Q9NUP7 481 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 TUBA8Q9NY65 449 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 TAS2R13Q9NYV9 303 aa11□□□□□ -0.65
CLN3-244ENST00000636147 ACTR3BQ9P1U1 418 aa11□□□□□ -0.65
CLN3-244ENST00000636147 RCOR3Q9P2K3 495 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 POLG2Q9UHN1 485 aa11□□□□□ -0.65
CLN3-244ENST00000636147 EIF3LQ9Y262 564 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 SLC27A5Q9Y2P5 690 aa11□□□□□ -0.65
CLN3-244ENST00000636147 TCAF1Q9Y4C2 921 aa11□□□□□ -0.65
CLN3-244ENST00000636147 MSI1O43347 362 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 EGFRP00533 1210 aa11□□□□□ -0.65
CLN3-244ENST00000636147 LGALS2P05162 132 aa11□□□□□ -0.65
CLN3-244ENST00000636147 MYL3P08590 195 aa11□□□□□ -0.65
CLN3-244ENST00000636147 ALOX5P09917 674 aa11□□□□□ -0.65
CLN3-244ENST00000636147 CD247P20963 164 aa11□□□□□ -0.65
CLN3-244ENST00000636147 IL12AP29459 219 aa11□□□□□ -0.65
CLN3-244ENST00000636147 RAB15P59190 212 aa11□□□□□ -0.65
CLN3-244ENST00000636147 VBP1P61758 197 aa11□□□□□ -0.65
CLN3-244ENST00000636147 APOFQ13790 326 aa11□□□□□ -0.65
CLN3-244ENST00000636147 MAPKAPK3Q16644 382 aa11□□□□□ -0.65
CLN3-244ENST00000636147 PTRHD1Q6GMV3 140 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 IGFN1Q86VF2 1251 aa11□□□□□ -0.65
CLN3-244ENST00000636147 CARM1Q86X55 608 aa11□□□□□ -0.65
CLN3-244ENST00000636147 ZNF420Q8TAQ5 688 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 STAG3L4Q8TBR4 150 aa11□□□□□ -0.65
CLN3-244ENST00000636147 SNX19Q92543 992 aa11□□□□□ -0.65
CLN3-244ENST00000636147 LRCH3Q96II8 777 aa11□□□□□ -0.65
CLN3-244ENST00000636147 DMRTB1Q96MA1 342 aa11□□□□□ -0.65
CLN3-244ENST00000636147 DUSP16Q9BY84 665 aa11□□□□□ -0.65
CLN3-244ENST00000636147 TEKT2Q9UIF3 430 aa11□□□□□ -0.65
CLN3-244ENST00000636147 MAGED1Q9Y5V3 778 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 KRBA1A5PL33 1030 aa11□□□□□ -0.65
CLN3-244ENST00000636147 ACOT8O14734 319 aa11□□□□□ -0.65
CLN3-244ENST00000636147 SEC22BO75396 215 aa11□□□□□ -0.65
CLN3-244ENST00000636147 VPS26AO75436 327 aa11□□□□□ -0.65
CLN3-244ENST00000636147 SLC26A2P50443 739 aa11□□□□□ -0.65
CLN3-244ENST00000636147 TWF1Q12792 350 aa11□□□□□ -0.65
CLN3-244ENST00000636147 DAG1Q14118 895 aa11□□□□□ -0.65
CLN3-244ENST00000636147 C9orf57Q5W0N0 161 aa11□□□□□ -0.65
CLN3-244ENST00000636147 CYS1Q717R9 158 aa11□□□□□ -0.65
CLN3-244ENST00000636147 P2RY8Q86VZ1 359 aa11□□□□□ -0.65
CLN3-244ENST00000636147 OR10A6Q8NH74 314 aa11□□□□□ -0.65
CLN3-244ENST00000636147 UBASH3BQ8TF42 649 aa11□□□□□ -0.65
CLN3-244ENST00000636147 TOP1MTQ969P6 601 aa11□□□□□ -0.65
CLN3-244ENST00000636147 BIRC7Q96CA5 298 aa11□□□□□ -0.65
CLN3-244ENST00000636147 TPD52L3Q96J77 140 aa11□□□□□ -0.65
CLN3-244ENST00000636147 EHD1Q9H4M9 534 aa11□□□□□ -0.65
CLN3-244ENST00000636147 ABI2Q9NYB9 513 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 UXTQ9UBK9 157 aaPredicted RBP11□□□□□ -0.65
CLN3-244ENST00000636147 DDX60Q8IY21 1712 aaKnown RBP11□□□□□ -0.65
CLN3-244ENST00000636147 ANKRD36CQ5JPF3 1778 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ZNF195O14628 629 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 TSC22D2O75157 780 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 SH3BGRLO75368 114 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 PGLSO95336 258 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 ARIH2O95376 493 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 KCNA5P22460 613 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 DNAJB2P25686 324 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 PCSK1P29120 753 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 RENBPP51606 427 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 DGKQP52824 942 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 RPL38P63173 70 aaKnown RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 GRIK4Q16099 956 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 COLEC12Q5KU26 742 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 TIGD7Q6NT04 549 aaPredicted RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 ZNF773Q6PK81 442 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 AHSA2Q719I0 299 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 SPATA2LQ8IUW3 424 aaPredicted RBP10.99□□□□□ -0.65
CLN3-244ENST00000636147 PACRGLQ8N7B6 248 aa10.99□□□□□ -0.65
CLN3-244ENST00000636147 OR56A4Q8NGH8 313 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms