RNA–Protein interactions for RNA: ENST00000635562.1

PSPC1-208, Transcript of paraspeckle component 1, human

TSL 3

Gene PSPC1, Length 422 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSPC1-208	ENST00000635562	SPATA46	Q5T0L3	261 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PDPK2P	Q6A1A2	396 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	ANKRD16	Q6P6B7	361 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	KLHL17	Q6TDP4	642 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	METAP1D	Q6UB28	335 aa	Predicted RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	ZNF600	Q6ZNG1	722 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	DPY19L3	Q6ZPD9	716 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SEPT14	Q6ZU15	432 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PARS2	Q7L3T8	475 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	WDR53	Q7Z5U6	358 aa	Predicted RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PEG10	Q86TG7	708 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	TRABD2A	Q86V40	505 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	MCEMP1	Q8IX19	187 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	BBS5	Q8N3I7	341 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	ZCCHC7	Q8N3Z6	543 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	GALNT4	Q8N4A0	578 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SLC44A3	Q8N4M1	653 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	LINC01465	Q8N7H1	131 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	OR6Y1	Q8NGX8	325 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SETD6	Q8TBK2	473 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SLC26A7	Q8TE54	656 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SLC13A3	Q8WWT9	602 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	OVCA2	Q8WZ82	227 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	TFAP2B	Q92481	460 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	NCSTN	Q92542	709 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	STAM	Q92783	540 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	KAT2B	Q92831	832 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	ZKSCAN4	Q969J2	545 aa	Predicted RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	TMIGD2	Q96BF3	282 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SLC22A18	Q96BI1	424 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	INTS12	Q96CB8	462 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	MRPL38	Q96DV4	380 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	MCRS1	Q96EZ8	462 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	KAZALD1	Q96I82	304 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	C7orf34	Q96L11	122 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PKP4	Q99569	1192 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SIKE1	Q9BRV8	207 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	KIFC3	Q9BVG8	833 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	MOV10L1	Q9BXT6	1211 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	CARD9	Q9H257	536 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	VPS16	Q9H269	839 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	KCNK13	Q9HB14	408 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PFDN4	Q9NQP4	134 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	ARHGEF3	Q9NR81	526 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	DUSP22	Q9NRW4	184 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	FAM114A2	Q9NRY5	505 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SOHLH2	Q9NX45	425 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	CYP39A1	Q9NYL5	469 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	TMOD2	Q9NZR1	351 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	CWC15	Q9P013	229 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	MRPL15	Q9P015	296 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	SEMA5B	Q9P283	1151 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	IPO11	Q9UI26	975 aa	Known RBP	3	□□□□□ -1.93
PSPC1-208	ENST00000635562	NFU1	Q9UMS0	254 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	DAPP1	Q9UN19	280 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PRELID1	Q9Y255	219 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	BTBD3	Q9Y2F9	522 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	POMT1	Q9Y6A1	747 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	PLEKHG2	Q9H7P9	1386 aa		3	□□□□□ -1.93
PSPC1-208	ENST00000635562	KDM3A	Q9Y4C1	1321 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	FAM90A20P	A6NIJ5	464 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	ZSCAN5B	A6NJL1	495 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	SLC9B1P1	A6NJY1	282 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	LINC00473	A8K010	186 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562		A8MV72	311 aa	Predicted RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	TARM1	B6A8C7	271 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	E2F3	O00716	465 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	PPEF2	O14830	753 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	HNRNPR	O43390	633 aa	Known RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	NUDT21	O43809	227 aa	Known RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	CYTIP	O60759	359 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	NIPSNAP2	O75323	286 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	RBMXL2	O75526	392 aa	Known RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	CTAG2	O75638	210 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	BAG4	O95429	457 aa	Known RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	CER1	O95813	267 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	KRT14	P02533	472 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	TUBB	P07437	444 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	CYP3A4	P08684	503 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	RPSA	P08865	295 aa	Known RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	SUPT20HL2	P0C7V6	817 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	TMEM225B	P0DP42	221 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	RALA	P11233	206 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	UBL4A	P11441	157 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	ADRA1D	P25100	572 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	PTBP1	P26599	531 aa	Known RBP eCLIP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	ALDH4A1	P30038	563 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	BMI1	P35226	326 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	PSMC2	P35998	433 aa	Known RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	PPARG	P37231	505 aa	Predicted RBP	2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	MTHFS	P49914	203 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	CLCNKA	P51800	687 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	BMX	P51813	675 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	DGKQ	P52824	942 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	PRRX1	P54821	245 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	TPTE	P56180	551 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	MAP3K7CL	P57077	242 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	SLC8A3	P57103	927 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	TUBB4B	P68371	445 aa		2.99	□□□□□ -1.93
PSPC1-208	ENST00000635562	SIM1	P81133	766 aa	Predicted RBP	2.99	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms