RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RASAL2Q9UJF2 1139 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 JRKLQ9Y4A0 524 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 VWA3AA6NCI4 1184 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 TCERG1O14776 1098 aaKnown RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 HEXAP06865 529 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 SHMT1P34896 483 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 CSNK2A1P68400 391 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 SORDQ00796 357 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 PLIN5Q00G26 463 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 ZC2HC1CQ53FD0 456 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 ANKRD45Q5TZF3 282 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 METTL7BQ6UX53 244 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 ZNF704Q6ZNC4 412 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 TDRPQ86YL5 185 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 CSNK2A3Q8NEV1 391 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 HUS1BQ8NHY5 278 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 HMGCLL1Q8TB92 370 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 NOC3LQ8WTT2 800 aaKnown RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 POF1BQ8WVV4 589 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 RILPL2Q969X0 211 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 ARHGEF26Q96DR7 871 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 MPHOSPH8Q99549 860 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 CABLES2Q9BTV7 478 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 PCGF6Q9BYE7 350 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 TAOK3Q9H2K8 898 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 CCDC177Q9NQR7 707 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 RASSF1Q9NS23 344 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 BEX4Q9NWD9 120 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-208ENST00000625916 ERVK-11Q9UQG0 969 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 SHROOM4Q9ULL8 1493 aa2.68□□□□□ -1.98
SCN1A-208ENST00000625916 A0A087X002 238 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 ZCWPW2A0A1B0GU75 182 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 PPM1GO15355 546 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-208ENST00000625916 EIF3DO15371 548 aaKnown RBP eCLIP2.67□□□□□ -1.98
SCN1A-208ENST00000625916 NCAM2O15394 837 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 EGFP01133 1207 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 VEGFAP15692 232 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-208ENST00000625916 AHRP35869 848 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 SLC8A3P57103 927 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 PRKG1Q13976 671 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 TRIM14Q14142 442 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 HSP90AB2PQ58FF8 381 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 BRAT1Q6PJG6 821 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 SLC46A3Q7Z3Q1 461 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 GPR180Q86V85 440 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 ADSSL1Q8N142 457 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 USP38Q8NB14 1042 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 C11orf65Q8NCR3 313 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 TNIP2Q8NFZ5 429 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 SVIPQ8NHG7 77 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 RUFY2Q8WXA3 655 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 IWS1Q96ST2 819 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 RBM4BQ9BQ04 359 aaKnown RBP2.67□□□□□ -1.98
SCN1A-208ENST00000625916 MCRIP2Q9BUT9 160 aaKnown RBP2.67□□□□□ -1.98
SCN1A-208ENST00000625916 C2orf42Q9NWW7 574 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 ADPRHL2Q9NX46 363 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 MARCH4Q9P2E8 410 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-208ENST00000625916 FEM1BQ9UK73 627 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 ZHX2Q9Y6X8 837 aa2.67□□□□□ -1.98
SCN1A-208ENST00000625916 COL5A2P05997 1499 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-208ENST00000625916 DUXAA6NLW8 204 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 B9A039 149 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 SPINT2O43291 252 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 TFP02787 698 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 NR3C1P04150 777 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 GALTP07902 379 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 CNPP09543 421 aaKnown RBP2.66□□□□□ -1.98
SCN1A-208ENST00000625916 ZNF23P17027 643 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 TAS2R38P59533 333 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 EFNB1P98172 346 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 SPOCK1Q08629 439 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 NAE1Q13564 534 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 POSTNQ15063 836 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 UGP2Q16851 508 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 CCSAPQ6IQ19 270 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-208ENST00000625916 MOGAT3Q86VF5 341 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 MAP7D3Q8IWC1 876 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 FTSJ3Q8IY81 847 aaKnown RBP2.66□□□□□ -1.98
SCN1A-208ENST00000625916 OR5R1Q8NH85 324 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 TRAPPC12Q8WVT3 735 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 COG8Q96MW5 612 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 EIF2AK1Q9BQI3 630 aaKnown RBP2.66□□□□□ -1.98
SCN1A-208ENST00000625916 RAD21L1Q9H4I0 556 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 BARHL2Q9NY43 387 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 KLHL20Q9Y2M5 609 aa2.66□□□□□ -1.98
SCN1A-208ENST00000625916 A6NL46 340 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 TEX22C9J3V5 150 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 E9PQ18 207 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 DCXO43602 365 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 TACC1O75410 805 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 IRF1P10914 325 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 CSF2RAP15509 400 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 HTR3AP46098 478 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 ARCN1P48444 511 aaKnown RBP2.65□□□□□ -1.99
SCN1A-208ENST00000625916 KRTAP10-8P60410 259 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 TUBB2AQ13885 445 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 FFAR4Q5NUL3 377 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 FRG2Q64ET8 278 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 HIST2H2BDQ6DRA6 164 aa2.65□□□□□ -1.99
SCN1A-208ENST00000625916 ZNF280DQ6N043 979 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms