RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 USP8P40818 1118 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 SYKP43405 635 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 RGRP47804 291 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 RAPSNQ13702 412 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.77□□□□□ -0.21
SNX1-214ENST00000625244 PYCR3Q53H96 274 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 GJB7Q6PEY0 223 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 ZDHHC17Q8IUH5 632 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 ST6GALNAC3Q8NDV1 305 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 FNIP1Q8TF40 1166 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 UBE2Q2Q8WVN8 375 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 INPP5DQ92835 1189 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 ECHDC3Q96DC8 303 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 TUBGCP5Q96RT8 1024 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 PLCB1Q9NQ66 1216 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 TMEM51Q9NW97 253 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 GPR83Q9NYM4 423 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 OGFRQ9NZT2 677 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 COPG2Q9UBF2 871 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 B4GALT6Q9UBX8 382 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 B3GNT3Q9Y2A9 372 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 GOLGA6CA6NDK9 693 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 GOLGA6BA6NDN3 693 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 F5H423 210 aaPredicted RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 GOLGA6L22H0YM25 854 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 C9P02748 559 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 GOLGA6DP0CG33 693 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 LPOP22079 712 aaPredicted RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 ADRA1BP35368 520 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 ETV3P41162 512 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 NDUFA8P51970 172 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 SNX16P57768 344 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 RPS15P62841 145 aaKnown RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 FAM102AQ5T9C2 384 aaPredicted RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 IYDQ6PHW0 289 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 ZNF517Q6ZMY9 492 aaPredicted RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 MARK2Q7KZI7 788 aaKnown RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 PPP1R3BQ86XI6 285 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 ADAMTS17Q8TE56 1095 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 SH3KBP1Q96B97 665 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 TBC1D31Q96DN5 1066 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 TGM7Q96PF1 710 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 ATP13A3Q9H7F0 1226 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 GOLGA6AQ9NYA3 693 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 TBC1D29Q9UFV1 150 aa13.76□□□□□ -0.21
SNX1-214ENST00000625244 G3BP2Q9UN86 482 aaKnown RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 FARSAQ9Y285 508 aaKnown RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 PCYT1BQ9Y5K3 369 aaPredicted RBP13.76□□□□□ -0.21
SNX1-214ENST00000625244 MDC1Q14676 2089 aaKnown RBP13.75□□□□□ -0.21
SNX1-214ENST00000625244 TMEM63AO94886 807 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 SERPINA4P29622 427 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 CLCN1P35523 988 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 ATP11AP98196 1134 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 CNGA3Q16281 694 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 MIIPQ5JXC2 388 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 DENND2CQ68D51 928 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 RAET1GQ6H3X3 334 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 PWWP2BQ6NUJ5 590 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 SRLQ86TD4 932 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 TRIM74Q86UV6 250 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 CBARPQ8N350 705 aaPredicted RBP13.75□□□□□ -0.21
SNX1-214ENST00000625244 GLIS1Q8NBF1 620 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 DTD2Q96FN9 168 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 NSMCE3Q96MG7 304 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 TRIM8Q9BZR9 551 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 EPB41L1Q9H4G0 881 aa13.75□□□□□ -0.21
SNX1-214ENST00000625244 STN1Q9H668 368 aaKnown RBP13.75□□□□□ -0.21
SNX1-214ENST00000625244 UBA2Q9UBT2 640 aaPredicted RBP13.75□□□□□ -0.21
SNX1-214ENST00000625244 PPP1R3GB7ZBB8 358 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 KIF1CO43896 1103 aaKnown RBP13.74□□□□□ -0.21
SNX1-214ENST00000625244 TYRP1P17643 537 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 LRRC63Q05C16 580 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 CCDC40Q4G0X9 1142 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 FAM69BQ5VUD6 431 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 HSD11B1LQ7Z5J1 315 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 SLC9B2Q86UD5 537 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 GALNT13Q8IUC8 556 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 RTL3Q8N8U3 475 aaKnown RBP13.74□□□□□ -0.21
SNX1-214ENST00000625244 ILKAPQ9H0C8 392 aaPredicted RBP13.74□□□□□ -0.21
SNX1-214ENST00000625244 CNOT8Q9UFF9 292 aaKnown RBP13.74□□□□□ -0.21
SNX1-214ENST00000625244 HOOK1Q9UJC3 728 aaKnown RBP13.74□□□□□ -0.21
SNX1-214ENST00000625244 TMEM59LQ9UK28 342 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 PRKAB1Q9Y478 270 aa13.74□□□□□ -0.21
SNX1-214ENST00000625244 J3KR12 359 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 E2F3O00716 465 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 TRAFD1O14545 582 aaPredicted RBP13.73□□□□□ -0.21
SNX1-214ENST00000625244 TOX3O15405 576 aaPredicted RBP13.73□□□□□ -0.21
SNX1-214ENST00000625244 RASSF9O75901 435 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 SOD1P00441 154 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 TEAD1P28347 426 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 SCNN1AP37088 669 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 GABRB2P47870 512 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 GLRBP48167 497 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 KRTAP10-9P60411 292 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 POLR2LP62875 67 aaKnown RBP13.73□□□□□ -0.21
SNX1-214ENST00000625244 APBA1Q02410 837 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 ART3Q13508 389 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 LRP8Q14114 963 aa13.73□□□□□ -0.21
SNX1-214ENST00000625244 C2CD6Q53TS8 623 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms