RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 DHRSXQ8N5I4 330 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PCDHB18PQ96TA0 734 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 GRIP2Q9C0E4 1043 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 GMEB2Q9UKD1 530 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 RAP2CQ9Y3L5 183 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 MYBPHLA2RUH7 354 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CLDN4O14493 209 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 OR10H3O60404 316 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 SNUPNO95149 360 aaKnown RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ABHD2P08910 425 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 APLP1P51693 650 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ITGA1P56199 1179 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 NOMO1Q15155 1222 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 WASHC2DQ5SRD0 308 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 C10orf107Q8IVU9 208 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 SLC4A11Q8NBS3 891 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PGM2Q96G03 612 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 C5orf34Q96MH7 638 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PWWP2AQ96N64 755 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CDADC1Q9BWV3 514 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 SRMSQ9H3Y6 488 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 TM7SF2O76062 418 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CBX6O95503 412 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 TRBC1P01850 177 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 GNPDA1P46926 289 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 RAB14P61106 215 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 LAPTM5Q13571 262 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CPTPQ5TA50 214 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PIWIL4Q7Z3Z4 852 aaKnown RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ZCCHC10Q8TBK6 192 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 TEX47Q8TBZ9 253 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ADAMTS15Q8TE58 950 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 WFIKKN2Q8TEU8 576 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 FZD9O00144 591 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 LMO2P25791 158 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 BLKP51451 505 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 NDST2P52849 883 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 AP1S1P61966 158 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ATP6V1C2Q8NEY4 427 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 FGFBP2Q9BYJ0 223 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 MMADHCQ9H3L0 296 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CCDC177Q9NQR7 707 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 TOR4AQ9NXH8 423 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 NR2E1Q9Y466 385 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 PCDHGC4Q9Y5F7 938 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 HEBP2Q9Y5Z4 205 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 LRRC10BA6NIK2 292 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 IQCF5A8MTL0 148 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 SLC6A2P23975 617 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 CDH5P33151 784 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-219ENST00000620786 AMZ1Q400G9 498 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ULK2Q8IYT8 1036 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 KCNS3Q9BQ31 491 aa11.34□□□□□ -0.59
CLIP1-219ENST00000620786 ZMPSTE24O75844 475 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 COX4I1P13073 169 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 GPD2P43304 727 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 GABRB2P47870 512 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 AVPR1BP47901 424 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 CORO7P57737 925 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 NAE1Q13564 534 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 INAVAQ3KP66 663 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ATXN7L2Q5T6C5 722 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 UNC5BQ8IZJ1 945 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 PRELID2Q8N945 189 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 C12orf42Q96LP6 360 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 TRMT61BQ9BVS5 477 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 GTPBP2Q9BX10 602 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 IL36AQ9UHA7 158 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ASB3Q9Y575 518 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 FAM237AA0A1B0GTK4 181 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 H3BQF6 201 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 WNT7AO00755 349 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 STX11O75558 287 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 PIAS1O75925 651 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ASLP04424 464 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 CSKP41240 450 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 GRIA3P42263 894 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 MRPS22P82650 360 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 RNASEH2BQ5TBB1 312 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 PLEKHA7Q6IQ23 1121 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 TMEM220Q6QAJ8 160 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 HDDC2Q7Z4H3 204 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 C4orf32Q8N8J7 132 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 CLHC1Q8NHS4 586 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ZNF624Q9P2J8 865 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 OR1F1O43749 312 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 IDO1P14902 403 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 CTSOP43234 321 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 LPIN1Q14693 890 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 KLHL12Q53G59 568 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 DDI2Q5TDH0 399 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 ESRP1Q6NXG1 681 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 IRF2BP2Q7Z5L9 587 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 C8orf59Q8N0T1 100 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 QKIQ96PU8 341 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 TMEM175Q9BSA9 504 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 SPAG4Q9NPE6 437 aa11.33□□□□□ -0.6
CLIP1-219ENST00000620786 PARP4Q9UKK3 1724 aaKnown RBP11.33□□□□□ -0.6
CLIP1-219ENST00000620786 TSC22D2O75157 780 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms