RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TCEAL5Q5H9L2 206 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 HTR3DQ70Z44 454 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 GPSM1Q86YR5 675 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 GPR22Q99680 433 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 MGME1Q9BQP7 344 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 PBX4Q9BYU1 374 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 MFSD1Q9H3U5 465 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 ARL8BQ9NVJ2 186 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 NPEPPSL1A6NEC2 478 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 ETV4P43268 484 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 DDX39BQ13838 428 aaKnown RBP15.67■□□□□ 0.1
CPSF1-213ENST00000620219 SPDYAQ5MJ70 313 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 DENND5AQ6IQ26 1287 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 CLNKQ7Z7G1 428 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 TSPAN33Q86UF1 283 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 THTPAQ9BU02 230 aa15.67■□□□□ 0.1
CPSF1-213ENST00000620219 RPSAP08865 295 aaKnown RBP15.66■□□□□ 0.1
CPSF1-213ENST00000620219 SLC7A9P82251 487 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 INO80DQ53TQ3 878 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-213ENST00000620219 RAET1GQ6H3X3 334 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 MMAAQ8IVH4 418 aaKnown RBP15.66■□□□□ 0.1
CPSF1-213ENST00000620219 SNX31Q8N9S9 440 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 FIBINQ8TAL6 211 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 DTX3LQ8TDB6 740 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 TCF7L2Q9NQB0 619 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 KLHL2O95198 593 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 EPOP01588 193 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 PLIN5Q00G26 463 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 BTKQ06187 659 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 TSNQ15631 228 aaKnown RBP15.66■□□□□ 0.1
CPSF1-213ENST00000620219 CHRNA6Q15825 494 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 ARL13AQ5H913 290 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-213ENST00000620219 LIPMQ5VYY2 423 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 LRRC66Q68CR7 880 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 STAG3L4Q8TBR4 150 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 CCDC126Q96EE4 140 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 NSL1Q96IY1 281 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 OSGEPL1Q9H4B0 414 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 ZMYM5Q9UJ78 669 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 L3MBTL1Q9Y468 752 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 ALDH1A2O94788 518 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 UNC5CO95185 931 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 SRCP12931 536 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 ENO3P13929 434 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-213ENST00000620219 PRKAA1Q13131 559 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 PSAPL1Q6NUJ1 521 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 OR8D1Q8WZ84 308 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 SCAMP4Q969E2 229 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 CACNA2D2Q9NY47 1150 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 PACSIN3Q9UKS6 424 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 HNF1BP35680 557 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 SPAM1P38567 509 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 STARD3Q14849 445 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 GALNTL6Q49A17 601 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 GDPD4Q6W3E5 623 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 STK40Q8N2I9 435 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 ZNF781Q8N8C0 355 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 KLK6Q92876 244 aa15.66■□□□□ 0.1
CPSF1-213ENST00000620219 EIF4E1BA6NMX2 242 aaKnown RBP15.65■□□□□ 0.1
CPSF1-213ENST00000620219 UBXN8O00124 270 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 BIRC5O15392 142 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 TULP3O75386 442 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 LEFTY1O75610 366 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 PGM1P36871 562 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 HTRA4P83105 476 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-213ENST00000620219 PEX6Q13608 980 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 RAB3IL1Q8TBN0 382 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 IL1RL2Q9HB29 575 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SCAMP1O15126 338 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 PGLSO95336 258 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 PROCP04070 461 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 RD3Q7Z3Z2 195 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 TMEM150AQ86TG1 271 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 RBFAQ8N0V3 343 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 EFCAB3Q8N7B9 438 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 ELMO1Q92556 727 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 CLP1Q92989 425 aaKnown RBP15.65■□□□□ 0.1
CPSF1-213ENST00000620219 TIFAQ96CG3 184 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 TUBB6Q9BUF5 446 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 C20orf27Q9GZN8 174 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SFXN1Q9H9B4 322 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 B4GALT6Q9UBX8 382 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.65■□□□□ 0.1
CPSF1-213ENST00000620219 CFAP73A6NFT4 308 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SYCE1LA8MT33 242 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SH3BGRLO75368 114 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 OR56A5P0C7T3 313 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 PCLAFQ15004 111 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 INSCQ1MX18 579 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 ANKS6Q68DC2 871 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 TRMT11Q7Z4G4 463 aaKnown RBP15.65■□□□□ 0.1
CPSF1-213ENST00000620219 AHI1Q8N157 1196 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 CPA6Q8N4T0 437 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 C2CD4AQ8NCU7 369 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SMARCD2Q92925 531 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 SH3KBP1Q96B97 665 aa15.65■□□□□ 0.1
CPSF1-213ENST00000620219 WASH3PC4AMC7 463 aa15.64■□□□□ 0.1
CPSF1-213ENST00000620219 SIX3O95343 332 aaPredicted RBP15.64■□□□□ 0.1
CPSF1-213ENST00000620219 TIE1P35590 1138 aa15.64■□□□□ 0.1
CPSF1-213ENST00000620219 RPL14P50914 215 aaKnown RBP15.64■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms