RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SPINT3P49223 89 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 DRG2P55039 364 aaKnown RBP5.67□□□□□ -1.5
CPNE3-208ENST00000614678 INSM1Q01101 510 aaPredicted RBP5.67□□□□□ -1.5
CPNE3-208ENST00000614678 TARDBPQ13148 414 aaKnown RBP eCLIP5.67□□□□□ -1.53e-7■□□□□ 10.3
CPNE3-208ENST00000614678 SLC1A5Q15758 541 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 CRTC3Q6UUV7 619 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 CHST15Q7LFX5 561 aaPredicted RBP5.67□□□□□ -1.5
CPNE3-208ENST00000614678 ERMP1Q7Z2K6 904 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 RAB44Q7Z6P3 723 aaPredicted RBP5.67□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF547Q8IVP9 402 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 LMNTD1Q8N9Z9 388 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 OR56A4Q8NGH8 313 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 SLC35B2Q8TB61 432 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 PMEPA1Q969W9 287 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 RBM41Q96IZ5 413 aaKnown RBP5.67□□□□□ -1.5
CPNE3-208ENST00000614678 WDR26Q9H7D7 661 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 SYNDIG1Q9H7V2 258 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 IL26Q9NPH9 171 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 TMEM9Q9P0T7 183 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 FTSJ1Q9UET6 329 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 TTC7AQ9ULT0 858 aaPredicted RBP5.67□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF711Q9Y462 761 aa5.67□□□□□ -1.5
CPNE3-208ENST00000614678 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 LOC285095A0A1B0GVY8 99 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 AVILO75366 819 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 LDOC1O95751 146 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 FGGP02679 453 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF135P52742 658 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CTBSQ01459 385 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 SLC14A1Q13336 389 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ARHGEF7Q14155 803 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 PPP2R5EQ16537 467 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 HENMT1Q5T8I9 393 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 HES3Q5TGS1 186 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ESRP1Q6NXG1 681 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 IL27RAQ6UWB1 636 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 USP45Q70EL2 814 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 LDB1Q86U70 411 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 OR4C6Q8NH72 309 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ZDHHC5Q9C0B5 715 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 DPEP2Q9H4A9 486 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ZFYVE1Q9HBF4 777 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ATXN10Q9UBB4 475 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 KLQ9UEF7 1012 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CFAP20Q9Y6A4 193 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CXorf51AA0A1B0GTR3 108 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 A0A1W2PQM1 296 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 MPOP05164 745 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 FGF1P05230 155 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CCDC175P0C221 793 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF8P17098 575 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ADRA1AP35348 466 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ARSDP51689 593 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CTSCP53634 463 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CAMK2BQ13554 666 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 TFDP2Q14188 446 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CERCAMQ5T4B2 595 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CES3Q6UWW8 571 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 XKR5Q6UX68 686 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 MACC1Q6ZN28 852 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 IQCHQ86VS3 1027 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 SLC13A5Q86YT5 568 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 TTC30BQ8N4P2 665 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 RCBTB1Q8NDN9 531 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 FAM46DQ8NEK8 389 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 GATA6Q92908 595 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 PWWP2AQ96N64 755 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 BOCQ9BWV1 1114 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 TEX101Q9BY14 249 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 OR2AG1Q9H205 316 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 GPSM3Q9Y4H4 160 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 KRT87PA6NCN2 255 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 OR2AG2A6NM03 316 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 LIASO43766 372 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 DNAJC6O75061 913 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ASMTLO95671 621 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ACP5P13686 325 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 POLR2LP62875 67 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CYP4F3Q08477 520 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 SRSF6Q13247 344 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 POU6F1Q14863 301 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 OASLQ15646 514 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 CHRNA6Q15825 494 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF569Q5MCW4 686 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 USP53Q70EK8 1073 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 NAGSQ8N159 534 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 SPDYE1Q8NFV5 336 aaPredicted RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 OR52K1Q8NGK4 314 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 NAF1Q96HR8 494 aaKnown RBP5.66□□□□□ -1.5
CPNE3-208ENST00000614678 PDLIM2Q96JY6 352 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 SPATA16Q9BXB7 569 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 SLC32A1Q9H598 525 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ERVMER34-1Q9H9K5 563 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ETNK1Q9HBU6 452 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 PRDM8Q9NQV8 689 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 TMEM51Q9NW97 253 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 DONSONQ9NYP3 566 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 TBC1D29Q9UFV1 150 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 FKBPLQ9UIM3 349 aa5.66□□□□□ -1.5
CPNE3-208ENST00000614678 ANGPTL2Q9UKU9 493 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms