RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 IFNB1P01574 187 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 GRIA1P42261 906 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 GPR1P46091 355 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 PPARDQ03181 441 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 SUZ12Q15022 739 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 N4BP2L1Q5TBK1 243 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 CREG2Q8IUH2 290 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 EID2Q8N6I1 236 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 RHBDD1Q8TEB9 315 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 SETD7Q8WTS6 366 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 LRRC40Q9H9A6 602 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 BPIFA1Q9NP55 256 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 IL26Q9NPH9 171 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 PHPT1Q9NRX4 125 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 WASF3Q9UPY6 502 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 KCTD3Q9Y597 815 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 ARL5AQ9Y689 179 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 CSNK1G3Q9Y6M4 447 aa19.39■□□□□ 0.69
SHKBP1-221ENST00000599833 PRSS38A1L453 326 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 SCAMP1O15126 338 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 AQP9O43315 295 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 LDB2O43679 373 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 BUD23O43709 281 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 SLC4A1P02730 911 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 PSMA3P25788 255 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 MSNP26038 577 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 HTR1BP28222 390 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 POLD2P49005 469 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 ZNF140P52738 457 aaPredicted RBP19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 C1orf61Q13536 156 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 TRIP6Q15654 476 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 CCDC70Q6NSX1 233 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 MICALCLQ6ZW33 695 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 GLT6D1Q7Z4J2 308 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 COL27A1Q8IZC6 1860 aaPredicted RBP19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 TRAM1L1Q8N609 369 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 OR4C6Q8NH72 309 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 DTX3LQ8TDB6 740 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 BRSK1Q8TDC3 778 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 PLEKHG4BQ96PX9 1271 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 HOMER3Q9NSC5 361 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 PAK5Q9P286 719 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 KLQ9UEF7 1012 aa19.38■□□□□ 0.69
SHKBP1-221ENST00000599833 ASXL3Q9C0F0 2248 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 CEP295Q9C0D2 2601 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 MED19A0JLT2 244 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 GPR39O43194 453 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 SIGLEC6O43699 453 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 RASGRP1O95267 797 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 TCP1P17987 556 aaKnown RBP19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 FDFT1P37268 417 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 COILP38432 576 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 TAF1AQ15573 450 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 ALS2CLQ60I27 953 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 SLCO6A1Q86UG4 719 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 NRROSQ86YC3 692 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 HID1Q8IV36 788 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 CCL4L1Q8NHW4 92 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 BTN2A2Q8WVV5 523 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 HIC2Q96JB3 615 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 NAPGQ99747 312 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 CDH19Q9H159 772 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 SLC32A1Q9H598 525 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 RAB6BQ9NRW1 208 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 NLGN3Q9NZ94 848 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 PTPRBP23467 1997 aa19.37■□□□□ 0.69
SHKBP1-221ENST00000599833 LMO7DNF2Z398 122 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 H3BM21 787 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 PDE2AO00408 941 aaPredicted RBP19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 INPP4BO15327 924 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 DNAJC6O75061 913 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 PHF2O75151 1096 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 PYGLP06737 847 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 IVLP07476 585 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 KELP23276 732 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 XIAPP98170 497 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 ATP13A5Q4VNC0 1218 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 KHDC1Q4VXA5 237 aaKnown RBP19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 PRRT3Q5FWE3 981 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 ERMP1Q7Z2K6 904 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 CCDC89Q8N998 374 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 ATL2Q8NHH9 583 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 LMX1AQ8TE12 382 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 MAGOHBQ96A72 148 aaKnown RBP19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 ZSCAN5AQ9BUG6 496 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 TMEM168Q9H0V1 697 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 CASS4Q9NQ75 786 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 PIH1D1Q9NWS0 290 aaKnown RBP19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 SPASTQ9UBP0 616 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 FEZ2Q9UHY8 353 aaPredicted RBP19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 SUFUQ9UMX1 484 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 TMEM98Q9Y2Y6 226 aa19.36■□□□□ 0.69
SHKBP1-221ENST00000599833 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 TCRBV7S3A2A0A539 114 aa19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 GOLGA6CA6NDK9 693 aa19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 GOLGA6BA6NDN3 693 aa19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 ERI2A8K979 691 aaKnown RBP19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 TPP1O14773 563 aa19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 YY2O15391 372 aa19.35■□□□□ 0.69
SHKBP1-221ENST00000599833 FFAR2O15552 330 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms