RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LMO7DNF2Z398 122 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 TRIM38O00635 465 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 SIGLEC6O43699 453 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 CRTAMO95727 393 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 AP2A1O95782 977 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 CEACAM5P06731 702 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 ANXA6P08133 673 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 GIMD1P0DJR0 217 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 BPIP17213 487 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 CKMT2P17540 419 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 GNG11P61952 73 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 PDE1BQ01064 536 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 C1orf61Q13536 156 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 TAF1AQ15573 450 aaPredicted RBP14.94□□□□□ -0.02
UPF1-202ENST00000594243 LVRNQ6Q4G3 990 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 LINC00523Q86TU6 105 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 GKN2Q86XP6 184 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 TRAM1L1Q8N609 369 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 PDCD7Q8N8D1 485 aaKnown RBP14.94□□□□□ -0.02
UPF1-202ENST00000594243 FAM181AQ8N9Y4 354 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 BRSK1Q8TDC3 778 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 ACTRT1Q8TDG2 376 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 OR1E3Q8WZA6 343 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 GLMNQ92990 594 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 COX14Q96I36 57 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 APOL2Q9BQE5 337 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 FRMD8Q9BZ67 464 aaPredicted RBP14.94□□□□□ -0.02
UPF1-202ENST00000594243 CYP4F12Q9HCS2 524 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 FGF22Q9HCT0 170 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 MRPL40Q9NQ50 206 aaKnown RBP14.94□□□□□ -0.02
UPF1-202ENST00000594243 NCKIPSDQ9NZQ3 722 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 SNX12Q9UMY4 172 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 SLC17A4Q9Y2C5 497 aa14.94□□□□□ -0.02
UPF1-202ENST00000594243 E7EVH7 732 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 INPP4BO15327 924 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 YY2O15391 372 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 USP12O75317 370 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 ASMTLO95671 621 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 FTH1P19P0C7X4 201 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 CDK4P11802 303 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 TCP1P17987 556 aaKnown RBP14.93□□□□□ -0.02
UPF1-202ENST00000594243 LPOP22079 712 aaPredicted RBP14.93□□□□□ -0.02
UPF1-202ENST00000594243 LMAN1P49257 510 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 DUSP3P51452 185 aaPredicted RBP14.93□□□□□ -0.02
UPF1-202ENST00000594243 SPARCL1Q14515 664 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 PROX2Q3B8N5 592 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 ALS2CLQ60I27 953 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 ZCCHC8Q6NZY4 707 aaKnown RBP14.93□□□□□ -0.02
UPF1-202ENST00000594243 TTC30BQ8N4P2 665 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 DTX3LQ8TDB6 740 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 PDXPQ96GD0 296 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 MS4A14Q96JA4 679 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 CLPBQ9H078 707 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 CAAP1Q9H8G2 361 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 CARS2Q9HA77 564 aaKnown RBP14.93□□□□□ -0.02
UPF1-202ENST00000594243 ETNK1Q9HBU6 452 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 BPIFA1Q9NP55 256 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 IL17CQ9P0M4 197 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 PCDHGA1Q9Y5H4 931 aa14.93□□□□□ -0.02
UPF1-202ENST00000594243 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.93□□□□□ -0.02
UPF1-202ENST00000594243 COL5A1P20908 1838 aaPredicted RBP14.93□□□□□ -0.02
UPF1-202ENST00000594243 FADS2P1A8MWK0 482 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 PGRMC1O00264 195 aaKnown RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 STX7O15400 261 aaKnown RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 SLC25A14O95258 325 aaPredicted RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 GAS8O95995 478 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 IVLP07476 585 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 ETS1P14921 441 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 SPAM1P38567 509 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 KCNJ1P48048 391 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 POLD2P49005 469 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 DAB2P98082 770 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 ILKQ13418 452 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 OLIG2Q13516 323 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 DEFB133Q30KQ1 61 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 DENND5AQ6IQ26 1287 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 DOK6Q6PKX4 331 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 SLCO6A1Q86UG4 719 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 TAB3Q8N5C8 712 aaPredicted RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 PRELID2Q8N945 189 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 MAGOHBQ96A72 148 aaKnown RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 SCARF2Q96GP6 870 aaPredicted RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 APOLD1Q96LR9 279 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 C19orf43Q9BQ61 176 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 TMEM168Q9H0V1 697 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 RMI1Q9H9A7 625 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 RAB6BQ9NRW1 208 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 KCND1Q9NSA2 647 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 TRNAU1APQ9NX07 287 aaKnown RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 TOR4AQ9NXH8 423 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 VPS18Q9P253 973 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 CNOT6Q9ULM6 557 aaKnown RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 SUFUQ9UMX1 484 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 TMEM98Q9Y2Y6 226 aa14.92□□□□□ -0.02
UPF1-202ENST00000594243 CNOT1A5YKK6 2376 aaKnown RBP14.92□□□□□ -0.02
UPF1-202ENST00000594243 FUCA1P04066 466 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 CKMT1AP12532 417 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 ACP1P24666 158 aa14.91□□□□□ -0.02
UPF1-202ENST00000594243 RPL22P35268 128 aaKnown RBP14.91□□□□□ -0.02
UPF1-202ENST00000594243 GNPDA1P46926 289 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms