RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 IFT81Q8WYA0 676 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 FCRL3Q96P31 734 aaPredicted RBP10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 PLEKHG4BQ96PX9 1271 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 APOOQ9BUR5 198 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 LGR4Q9BXB1 951 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 CAAP1Q9H8G2 361 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 UGT1A7Q9HAW7 530 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 UGT1A10Q9HAW8 530 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 UGT1A8Q9HAW9 530 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 MRM3Q9HC36 420 aaKnown RBP10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 FAM114A2Q9NRY5 505 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 TREX1Q9NSU2 369 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 NFKBIL1Q9UBC1 381 aaPredicted RBP10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 CNOT6Q9ULM6 557 aaKnown RBP10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 MAD1L1Q9Y6D9 718 aa10.65□□□□□ -0.7
SMARCA4-213ENST00000587988 PI4KAP42356 2102 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PLXNB3Q9ULL4 1909 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 GLYATL1P3A0A0U1RQE8 302 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 FAM237BA0A1B0GVD1 139 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 A0A1B0GVT2 93 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 CCDC162PA2VCL2 907 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 A6NNZ2 444 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 E7ESA3 106 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PROB1E7EW31 1015 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 H7C0S8 307 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 NDC80O14777 642 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 INPP4BO15327 924 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 SRP72O76094 671 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PRAMEF1O95521 474 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 RETP07949 1114 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PRSS56P0CW18 603 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 THEGLP0DJG4 465 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 GNSP15586 552 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 TSHRP16473 764 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 MC4RP32245 332 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 HADHAP40939 763 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ELK3P41970 407 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 CDKN1CP49918 316 aaPredicted RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 AFF3P51826 1226 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 CDK3Q00526 305 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 CAV1Q03135 178 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ACVR1Q04771 509 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PDIA2Q13087 525 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 LAMB3Q13751 1172 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 FASTKD3Q14CZ7 662 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 HIF1AQ16665 826 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 DUOXA1Q1HG43 343 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 SKIDA1Q1XH10 827 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ATP13A5Q4VNC0 1218 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 DNAJC21Q5F1R6 531 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PLA2G2CQ5R387 149 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ZNF648Q5T619 568 aaPredicted RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ZDHHC20Q5W0Z9 365 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 TRIM74Q86UV6 250 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 HEATR4Q86WZ0 1026 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 SPATS2Q86XZ4 545 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ANKMY2Q8IV38 441 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PDIK1LQ8N165 341 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 TRAM1L1Q8N609 369 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PNPLA1Q8N8W4 532 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ZNF398Q8TD17 642 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PTCD2Q8WV60 388 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 HDAC10Q969S8 669 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 STAMBPL1Q96FJ0 436 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 KLHDC7BQ96G42 594 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 EBNA1BP2Q99848 306 aaKnown RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 C19orf43Q9BQ61 176 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 TEX101Q9BY14 249 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 FRMD8Q9BZ67 464 aaPredicted RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 FAM96AQ9H5X1 160 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PLAC1Q9HBJ0 212 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ARFGAP3Q9NP61 516 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 GPR27Q9NS67 375 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 RAD18Q9NS91 495 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 IL1RAPL1Q9NZN1 696 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 RIMKLBQ9ULI2 386 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 CHMP2BQ9UQN3 213 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 PCDHGA5Q9Y5G8 931 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 TEX264Q9Y6I9 313 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 V9GYY5 206 aaPredicted RBP10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 ADAMTS9Q9P2N4 1935 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 MUC6Q6W4X9 2439 aa10.64□□□□□ -0.71
SMARCA4-213ENST00000587988 RALGAPA1Q6GYQ0 2036 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 TP53BP1Q12888 1972 aaPredicted RBP10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 ZCWPW2A0A1B0GU75 182 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 MAGEB16A2A368 324 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 PRR5-ARHGAP8B1AHC4 643 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 TLR4O00206 839 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 VILLO15195 856 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 GOT2P00505 430 aaKnown RBP10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 CFIP05156 583 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 ARNTP27540 789 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 TEAD1P28347 426 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 HOXD12P35452 270 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 DPP6P42658 865 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 RABIFP47224 123 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 YPEL5P62699 121 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 IRX4P78413 519 aa10.63□□□□□ -0.71
SMARCA4-213ENST00000587988 SPEM2Q0P670 501 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms