RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SUFUQ9UMX1 484 aa19.39■□□□□ 0.69
SS18-209ENST00000578595 GPR34Q9UPC5 381 aa19.39■□□□□ 0.69
SS18-209ENST00000578595 GPSM3Q9Y4H4 160 aa19.39■□□□□ 0.69
SS18-209ENST00000578595 NEUROG3Q9Y4Z2 214 aa19.39■□□□□ 0.69
SS18-209ENST00000578595 PCDHGA1Q9Y5H4 931 aa19.39■□□□□ 0.69
SS18-209ENST00000578595 DGKBQ9Y6T7 804 aa19.39■□□□□ 0.69
SS18-209ENST00000578595 ZNF106Q9H2Y7 1883 aaKnown RBP19.39■□□□□ 0.69
SS18-209ENST00000578595 YY2O15391 372 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 SOD1P00441 154 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 AGTP01019 485 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 IFNB1P01574 187 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 CKMT1AP12532 417 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 ACP1P24666 158 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 TEAD1P28347 426 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 CLDN6P56747 220 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 NR0B2Q15466 257 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 GALNT15Q8N3T1 639 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 PPP1R2P1Q96PQ5 205 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 HACD3Q9P035 362 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 ZNF148Q9UQR1 794 aa19.38■□□□□ 0.69
SS18-209ENST00000578595 IGF2RP11717 2491 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 LOC285095A0A1B0GVY8 99 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 RGSL1A5PLK6 1076 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 FAM149AA5PLN7 773 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 B4DGG1 531 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 AURKAO14965 403 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 ZSCAN12O43309 604 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 CEP104O60308 925 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 USP12O75317 370 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 EPOP01588 193 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 ATP1A1P05023 1023 aaKnown RBP19.37■□□□□ 0.69
SS18-209ENST00000578595 CEACAM5P06731 702 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 CXCR5P32302 372 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 ACTN2P35609 894 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 GDF10P55107 478 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 ILF3Q12906 894 aaKnown RBP eCLIP19.37■□□□□ 0.69
SS18-209ENST00000578595 OLIG2Q13516 323 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 HENMT1Q5T8I9 393 aaKnown RBP19.37■□□□□ 0.69
SS18-209ENST00000578595 EFL1Q7Z2Z2 1120 aaKnown RBP19.37■□□□□ 0.69
SS18-209ENST00000578595 TMC3Q7Z5M5 1100 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 RAVER1Q8IY67 606 aaKnown RBP19.37■□□□□ 0.69
SS18-209ENST00000578595 GPR26Q8NDV2 337 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 FAM46DQ8NEK8 389 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 IFI44Q8TCB0 444 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 GSDMCQ9BYG8 508 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 FRMD8Q9BZ67 464 aaPredicted RBP19.37■□□□□ 0.69
SS18-209ENST00000578595 CDH19Q9H159 772 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 ABCG4Q9H172 646 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 DPEP2Q9H4A9 486 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 TRABDQ9H4I3 376 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 USP29Q9HBJ7 922 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 ARFGAP3Q9NP61 516 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 UNC13CQ8NB66 2214 aa19.37■□□□□ 0.69
SS18-209ENST00000578595 AKAP13Q12802 2813 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 C5orf60A6NFR6 353 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 FADS2P1A8MWK0 482 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 BUD23O43709 281 aaKnown RBP19.36■□□□□ 0.69
SS18-209ENST00000578595 CDK4P11802 303 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 ILKQ13418 452 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 SPARCL1Q14515 664 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 P3H1Q32P28 736 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 HES3Q5TGS1 186 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 GUSBP11Q6P575 273 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 MARCH9Q86YJ5 346 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 GALNT13Q8IUC8 556 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 SLC35F3Q8IY50 421 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 FAM181AQ8N9Y4 354 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 KYQ8NBH2 561 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 CCL4L1Q8NHW4 92 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 GDAP1Q8TB36 358 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 SLC35B2Q8TB61 432 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 PTCD2Q8WV60 388 aaKnown RBP19.36■□□□□ 0.69
SS18-209ENST00000578595 EID2BQ96D98 161 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 CNTNAP3BQ96NU0 1288 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 OR2M4Q96R27 311 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 WDR24Q96S15 920 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 TBL1YQ9BQ87 522 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 GORASP1Q9BQQ3 440 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 ZSCAN5AQ9BUG6 496 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 CNTNAP3Q9BZ76 1288 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 TRMT1Q9NXH9 659 aaKnown RBP19.36■□□□□ 0.69
SS18-209ENST00000578595 PKP3Q9Y446 797 aa19.36■□□□□ 0.69
SS18-209ENST00000578595 LIASO43766 372 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 SLC25A14O95258 325 aaPredicted RBP19.35■□□□□ 0.69
SS18-209ENST00000578595 FGGP02679 453 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 JUPP14923 745 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 BPIP17213 487 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 LMAN1P49257 510 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 BIRC2Q13490 618 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 LONRF2Q1L5Z9 754 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 SLC30A9Q6PML9 568 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 NLRP8Q86W28 1048 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 SDR16C5Q8N3Y7 309 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 ARL10Q8N8L6 244 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 CCDC89Q8N998 374 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 MAPK15Q8TD08 544 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 BOCQ9BWV1 1114 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 TLR10Q9BXR5 811 aa19.35■□□□□ 0.69
SS18-209ENST00000578595 FRMD8P1Q9BZ68 369 aaPredicted RBP19.35■□□□□ 0.69
SS18-209ENST00000578595 KCNF1Q9H3M0 494 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms