RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 SCARF2Q96GP6 870 aaPredicted RBP19.22■□□□□ 0.67
SS18-208ENST00000577751 APOLD1Q96LR9 279 aa19.22■□□□□ 0.67
SS18-208ENST00000577751 FICDQ9BVA6 458 aa19.22■□□□□ 0.67
SS18-208ENST00000577751 ARNT2Q9HBZ2 717 aa19.22■□□□□ 0.67
SS18-208ENST00000577751 CYP4F12Q9HCS2 524 aa19.22■□□□□ 0.67
SS18-208ENST00000577751 RAD18Q9NS91 495 aa19.22■□□□□ 0.67
SS18-208ENST00000577751 TRMT1Q9NXH9 659 aaKnown RBP19.22■□□□□ 0.67
SS18-208ENST00000577751 NCOR2Q9Y618 2525 aa19.22■□□□□ 0.67
SS18-208ENST00000577751 LY6G6EA0A0G2JKS1 128 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 CEP104O60308 925 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 TOP3BO95985 862 aaKnown RBP19.21■□□□□ 0.67
SS18-208ENST00000577751 CELA2BP08218 269 aaPredicted RBP19.21■□□□□ 0.67
SS18-208ENST00000577751 BPIP17213 487 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 OLIG2Q13516 323 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 DENND5AQ6IQ26 1287 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 LVRNQ6Q4G3 990 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 SLC35F6Q8N357 371 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 RASGEF1CQ8N431 466 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 IL17CQ9P0M4 197 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 ZNF148Q9UQR1 794 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 DRG1Q9Y295 367 aaKnown RBP19.21■□□□□ 0.67
SS18-208ENST00000577751 U3KQA8 63 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 PTPRBP23467 1997 aa19.21■□□□□ 0.67
SS18-208ENST00000577751 IVLP07476 585 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 ANXA6P08133 673 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 CKMT1AP12532 417 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 ILKQ13418 452 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 SNX1Q13596 522 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 C6orf132Q5T0Z8 1188 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 TRAM1L1Q8N609 369 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 DTX3LQ8TDB6 740 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 BLOC1S5Q8TDH9 187 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 PTCD2Q8WV60 388 aaKnown RBP19.2■□□□□ 0.66
SS18-208ENST00000577751 PBKQ96KB5 322 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 PLEKHG4BQ96PX9 1271 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 APOL2Q9BQE5 337 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 ZSCAN5AQ9BUG6 496 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 BOCQ9BWV1 1114 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 TMEM168Q9H0V1 697 aa19.2■□□□□ 0.66
SS18-208ENST00000577751 FAM221BA6H8Z2 402 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 USP27XA6NNY8 438 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 INPP4BO15327 924 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 HYAL3O43820 417 aaPredicted RBP19.19■□□□□ 0.66
SS18-208ENST00000577751 KIF5CO60282 957 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 SLC4A1P02730 911 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 POLD2P49005 469 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 LONRF2Q1L5Z9 754 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 PDPK2PQ6A1A2 396 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 GLT6D1Q7Z4J2 308 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 TRIM74Q86UV6 250 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 GKN2Q86XP6 184 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 CHCHD4Q8N4Q1 142 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 TBL1YQ9BQ87 522 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 SPATA16Q9BXB7 569 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 CARS2Q9HA77 564 aaKnown RBP19.19■□□□□ 0.66
SS18-208ENST00000577751 BPIFA1Q9NP55 256 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 TRNAU1APQ9NX07 287 aaKnown RBP19.19■□□□□ 0.66
SS18-208ENST00000577751 FEZ2Q9UHY8 353 aaPredicted RBP19.19■□□□□ 0.66
SS18-208ENST00000577751 MOSPD1Q9UJG1 213 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 ANGPTL2Q9UKU9 493 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 TTC7AQ9ULT0 858 aaPredicted RBP19.19■□□□□ 0.66
SS18-208ENST00000577751 SUFUQ9UMX1 484 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 TMEM98Q9Y2Y6 226 aa19.19■□□□□ 0.66
SS18-208ENST00000577751 ZNF106Q9H2Y7 1883 aaKnown RBP19.18■□□□□ 0.66
SS18-208ENST00000577751 PSMD3O43242 534 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 USP12O75317 370 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 RFPL3O75679 317 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 AP2A1O95782 977 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 ATP1A1P05023 1023 aaKnown RBP19.18■□□□□ 0.66
SS18-208ENST00000577751 CDK4P11802 303 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 MSNP26038 577 aaKnown RBP19.18■□□□□ 0.66
SS18-208ENST00000577751 DAB2P98082 770 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 CCDC173Q0VFZ6 552 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 SPARCL1Q14515 664 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 ZDHHC20Q5W0Z9 365 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 ALS2CLQ60I27 953 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 PDCD7Q8N8D1 485 aaKnown RBP19.18■□□□□ 0.66
SS18-208ENST00000577751 CCL4L1Q8NHW4 92 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 BRSK1Q8TDC3 778 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 GPBAR1Q8TDU6 330 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 LRRC45Q96CN5 670 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 SCNM1Q9BWG6 230 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 LRRC40Q9H9A6 602 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 HOMER3Q9NSC5 361 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP19.18■□□□□ 0.66
SS18-208ENST00000577751 NCKIPSDQ9NZQ3 722 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 VPS18Q9P253 973 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 PYCARDQ9ULZ3 195 aa19.18■□□□□ 0.66
SS18-208ENST00000577751 OAS3Q9Y6K5 1087 aaKnown RBP19.18■□□□□ 0.66
SS18-208ENST00000577751 GOLGA4Q13439 2230 aaKnown RBP19.17■□□□□ 0.66
SS18-208ENST00000577751 DNAJC6O75061 913 aa19.17■□□□□ 0.66
SS18-208ENST00000577751 PPFIA2O75334 1257 aa19.17■□□□□ 0.66
SS18-208ENST00000577751 MYF5P13349 255 aa19.17■□□□□ 0.66
SS18-208ENST00000577751 DUSP3P51452 185 aaPredicted RBP19.17■□□□□ 0.66
SS18-208ENST00000577751 TAF1AQ15573 450 aaPredicted RBP19.17■□□□□ 0.66
SS18-208ENST00000577751 SMAD1Q15797 465 aaKnown RBP19.17■□□□□ 0.66
SS18-208ENST00000577751 PYCR3Q53H96 274 aa19.17■□□□□ 0.66
SS18-208ENST00000577751 DOK6Q6PKX4 331 aa19.17■□□□□ 0.66
SS18-208ENST00000577751 TMPRSS7Q7RTY8 843 aa19.17■□□□□ 0.66
SS18-208ENST00000577751 PRUNE1Q86TP1 453 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms