RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 VMP1Q96GC9 406 aa13.28□□□□□ -0.28
CLK3-206ENST00000562078 VPS35Q96QK1 796 aa13.28□□□□□ -0.28
CLK3-206ENST00000562078 SEZ6LQ9BYH1 1024 aa13.28□□□□□ -0.28
CLK3-206ENST00000562078 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.28□□□□□ -0.282e-7■■■■□ 23.4
CLK3-206ENST00000562078 MIR1-1HGQ9H1L0 117 aa13.28□□□□□ -0.28
CLK3-206ENST00000562078 ARMC1Q9NVT9 282 aa13.28□□□□□ -0.28
CLK3-206ENST00000562078 HUS1O60921 280 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 CD40LGP29965 261 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 CAPGP40121 348 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 THPOP40225 353 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 LILRA4P59901 499 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TUBA3CQ13748 450 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TFDP2Q14188 446 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 CATSPEREQ5SY80 951 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TMEM236Q5W0B7 351 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 LSMEM2Q8N112 164 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 CRYBG2Q8N1P7 616 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 DHRSXQ8N5I4 330 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TOP1MTQ969P6 601 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 DUS3LQ96G46 650 aaKnown RBP13.27□□□□□ -0.29
CLK3-206ENST00000562078 RNF157Q96PX1 679 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 PSAT1Q9Y617 370 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 MAU2Q9Y6X3 613 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TSC2P49815 1807 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 UGT2B11O75310 529 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 MAP3K6O95382 1288 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 SNAP29O95721 258 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 ATP6V1B2P21281 511 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 IGFBP6P24592 240 aaPredicted RBP13.27□□□□□ -0.29
CLK3-206ENST00000562078 ALDH4A1P30038 563 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 ATXN1P54253 815 aaKnown RBP13.27□□□□□ -0.29
CLK3-206ENST00000562078 SNX16P57768 344 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 ANO4Q32M45 955 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TBCELQ5QJ74 424 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 SEL1L3Q68CR1 1132 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 LAYNQ6UX15 382 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 PLD6Q8N2A8 252 aaKnown RBP13.27□□□□□ -0.29
CLK3-206ENST00000562078 CNTD1Q8N815 330 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 CITED4Q96RK1 184 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 ALOXE3Q9BYJ1 711 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 UNC93B1Q9H1C4 597 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 RUBCNLQ9H714 662 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 CD320Q9NPF0 282 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 C12orf4Q9NQ89 552 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TRMT13Q9NUP7 481 aaKnown RBP13.27□□□□□ -0.29
CLK3-206ENST00000562078 RAD54BQ9Y620 910 aa13.27□□□□□ -0.29
CLK3-206ENST00000562078 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 HDAC3O15379 428 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 MAN1A2O60476 641 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 LTFP02788 710 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 ATP5OP48047 213 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 CTAG1AP78358 180 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 MRPS15P82914 257 aaKnown RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 PIGFQ07326 219 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 ATP6AP1Q15904 470 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 CTF1Q16619 201 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 BROXQ5VW32 411 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 SLC26A9Q7LBE3 791 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 CMC1Q7Z7K0 106 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 DHFR2Q86XF0 187 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 ZDHHC17Q8IUH5 632 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 CADM2Q8N3J6 435 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 B3GALNT2Q8NCR0 500 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 PNPT1Q8TCS8 783 aaKnown RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 BRSK1Q8TDC3 778 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 ACMSDQ8TDX5 336 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 TMEM246Q9BRR3 403 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 TSEN34Q9BSV6 310 aaKnown RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 CHID1Q9BWS9 393 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 SP140LQ9H930 580 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 STARD7Q9NQZ5 370 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 DDX28Q9NUL7 540 aaKnown RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 EIF3LQ9Y262 564 aaKnown RBP13.26□□□□□ -0.29
CLK3-206ENST00000562078 PMF1-BGLAPU3KQ54 211 aa13.26□□□□□ -0.29
CLK3-206ENST00000562078 A0A1W2PQ45 241 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 A0A1W2PQY0 241 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 RAD51BO15315 384 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 GPC4O75487 556 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 MTRF1O75570 445 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 FKBP9O95302 570 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 RPLP2P05387 115 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 F7P08709 466 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 IL4RP24394 825 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 ARNTP27540 789 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 ETV3P41162 512 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 PSMD8P48556 350 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 LSM3P62310 102 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 TRAP1Q12931 704 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 ACAP2Q15057 778 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 PDK2Q15119 407 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 EML3Q32P44 896 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 BOLA3Q53S33 107 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 DESI1Q6ICB0 168 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 TFAP2DQ7Z6R9 452 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 GATAD2AQ86YP4 633 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 HACE1Q8IYU2 909 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 SFRP1Q8N474 314 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 PLD5Q8N7P1 536 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 POC5Q8NA72 575 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms