RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 SMPD3Q9NY59 655 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 A0A1W2PQ67 120 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 MCIDASD6RGH6 385 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 MPZL2O60487 215 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ADRA1BP35368 520 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 PTPN5P54829 565 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 MRPS6P82932 125 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 SMAD3P84022 425 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZFP69Q49AA0 526 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZZZ3Q8IYH5 903 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 PWWP2AQ96N64 755 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 LRTM1Q9HBL6 345 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 RASSF1Q9NS23 344 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 SUCOQ9UBS9 1254 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF180Q9UJW8 692 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 GNEQ9Y223 722 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 PPRC1Q5VV67 1664 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 KRT33AO76009 404 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CCNE2O96020 404 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 KELP23276 732 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 SULT2A1Q06520 285 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 INTS6LQ5JSJ4 861 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 UBE2R2Q712K3 238 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 RBM15BQ8NDT2 890 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 PFDN2Q9UHV9 154 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CAPN8A6NHC0 703 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 H0Y858 1186 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 PAPSS1O43252 624 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 LRATO95237 230 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 SLC25A14O95258 325 aaPredicted RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 IGFBP5P24593 272 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 RPS6KA3P51812 740 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 DLG2Q15700 870 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CATSPERGQ6ZRH7 1159 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ARL10Q8N8L6 244 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 OR10H5Q8NGA6 315 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 ADAMTS15Q8TE58 950 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 DNAJC11Q9NVH1 559 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CKLFQ9UBR5 152 aa13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 CLTCQ00610 1675 aaKnown RBP13.17□□□□□ -0.3
CSPG4P11-201ENST00000560634 TFECO14948 347 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 SCN2BO60939 215 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CLDN11O75508 207 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 RPP40O75818 363 aaKnown RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ETS2P15036 469 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 GPD2P43304 727 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 SSR2P43308 183 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CCR3P51677 355 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 AKR1D1P51857 326 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 POLR2JP52435 117 aaKnown RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 MAXP61244 160 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ARF5P84085 180 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 FAM98AQ8NCA5 519 aaKnown RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 AIF1LQ9BQI0 150 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 WDR55Q9H6Y2 383 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 MAT2BQ9NZL9 334 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 GULP1Q9UBP9 304 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 SEC14L3Q9UDX4 400 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF214Q9UL59 606 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 R3HDM2Q9Y2K5 976 aaKnown RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ELOVL7A1L3X0 281 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 REM1O75628 298 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 SCELO95171 688 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 PIRTP0C851 137 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ARFIP1P53367 373 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 HSF2Q03933 536 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 SCN1BQ07699 218 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 USP41Q3LFD5 358 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 KLHL35Q6PF15 583 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CACUL1Q86Y37 369 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 PNPT1Q8TCS8 783 aaKnown RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 HPS1Q92902 700 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 AP2M1Q96CW1 435 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 C11orf24Q96F05 449 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 TSSK3Q96PN8 268 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 GSDMCQ9BYG8 508 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CDH22Q9UJ99 828 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ZNF221Q9UK13 617 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 MRPL42Q9Y6G3 142 aaKnown RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 NWD1Q149M9 1564 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 MYPNQ86TC9 1320 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 A0A0U1RQJ8 604 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 BCKDKO14874 412 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 TGFB1I1O43294 461 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 TLR5O60602 858 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 RLN1P04808 185 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CRYBB1P53674 252 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 YBEYP58557 167 aaPredicted RBP13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 PGBD2Q6P3X8 592 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 TMC8Q8IU68 726 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 DAW1Q8N136 415 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 RAD51AP1Q96B01 352 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CIB1Q99828 191 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 UNC93B1Q9H1C4 597 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 TULP3O75386 442 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CALCAP01258 141 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 ASLP04424 464 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 CYP4B1P13584 511 aa13.16□□□□□ -0.3
CSPG4P11-201ENST00000560634 MTHFRP42898 656 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms