RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FATE1Q969F0 183 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 RNF25Q96BH1 459 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 HDAC11Q96DB2 347 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 CCDC42Q96M95 316 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ZNF830Q96NB3 372 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 OR2M4Q96R27 311 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 WDR24Q96S15 920 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 MLPHQ9BV36 600 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 MAK16Q9BXY0 300 aaKnown RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 CEP41Q9BYV8 373 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 TSPY26PQ9H489 355 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ABHD10Q9NUJ1 306 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 HAUS2Q9NVX0 235 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 AMACRQ9UHK6 382 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ZNHIT2Q9UHR6 403 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 PRKAB1Q9Y478 270 aa10.17□□□□□ -0.78
LDLR-214ENST00000560628 ARHGEF17Q96PE2 2063 aaPredicted RBP10.17□□□□□ -0.78
LDLR-214ENST00000560628 C1orf232A0A0U1RR37 186 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 C3orf70A6NLC5 250 aaPredicted RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 TK2O00142 265 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 APOL1O14791 398 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 PPM1DO15297 605 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 EFSO43281 561 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 C1QL1O75973 258 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 KRT1P04264 644 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 CA4P22748 312 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 MPSTP25325 297 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 CD1CP29017 333 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 MLLT3P42568 568 aaPredicted RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 SPINT3P49223 89 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 MAPK10P53779 464 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 RPL26P61254 145 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 DYNLT1P63172 113 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 PPIDQ08752 370 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 C19orf57Q0VDD7 668 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 EIF3IQ13347 325 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 GALNT3Q14435 633 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 C16orf72Q14CZ0 275 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 LLGL1Q15334 1064 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 PYCR3Q53H96 274 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 KIAA1614Q5VZ46 1190 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 ZNF574Q6ZN55 896 aaPredicted RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 CCDC81Q6ZN84 652 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 ZNF765Q7L2R6 523 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 NLRP8Q86W28 1048 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 ZNF761Q86XN6 746 aaPredicted RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 RFX6Q8HWS3 928 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 SLITRK4Q8IW52 837 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 PLD5Q8N7P1 536 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 EXD1Q8NHP7 514 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 USP7Q93009 1102 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 SCARF2Q96GP6 870 aaPredicted RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 AGAP3Q96P47 875 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 NUDT22Q9BRQ3 303 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 FAM83DQ9H4H8 585 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 ARFGAP3Q9NP61 516 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 SEPT10Q9P0V9 454 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 LCMT1Q9UIC8 334 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 CNOT6Q9ULM6 557 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 RPL26L1Q9UNX3 145 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 SSUH2Q9Y2M2 353 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 PCDHGA7Q9Y5G6 932 aa10.16□□□□□ -0.78
LDLR-214ENST00000560628 PCYT1BQ9Y5K3 369 aaPredicted RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 OAS3Q9Y6K5 1087 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 FASNP49327 2511 aaKnown RBP10.16□□□□□ -0.78
LDLR-214ENST00000560628 IGSF10Q6WRI0 2623 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 PRAMEF33A0A0G2JMD5 474 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 FADS2P1A8MWK0 482 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ANKRD66B4E2M5 251 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 K7ENP7 123 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 NVLO15381 856 aaKnown RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 PRAMEF10O60809 474 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 MFAP3LO75121 409 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 CPNE6O95741 557 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 EML2O95834 649 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 PIRTP0C851 137 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 CCL4P13236 92 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ARHGAP25P42331 645 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 PPM1FP49593 454 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 IFI35P80217 286 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 RHDQ02161 417 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 SRSF6Q13247 344 aaKnown RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 PCSK7Q16549 785 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ODF2Q5BJF6 829 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ZNF648Q5T619 568 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 SLC9A4Q6AI14 798 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 INO80CQ6PI98 192 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 CHST15Q7LFX5 561 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 LYSMD3Q7Z3D4 306 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ZNF438Q7Z4V0 828 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ZFAND4Q86XD8 727 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 GALNT13Q8IUC8 556 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 RHOT2Q8IXI1 618 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 RCBTB1Q8NDN9 531 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 CCHCR1Q8TD31 782 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 COX14Q96I36 57 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 CCNL2Q96S94 520 aaPredicted RBP10.15□□□□□ -0.78
LDLR-214ENST00000560628 CMKLR1Q99788 373 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 ADGRE3Q9BY15 652 aa10.15□□□□□ -0.78
LDLR-214ENST00000560628 BRD8Q9H0E9 1235 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms