RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PGGT1BP53609 377 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 ALDH18A1P54886 795 aaKnown RBP17.75■□□□□ 0.43
SNX1-208ENST00000559844 DNAJB13P59910 316 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 RHOAP61586 193 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 PRKAA1Q13131 559 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 TUBB3Q13509 450 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 CSHL1Q14406 222 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 ACAP2Q15057 778 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 TJAP1Q5JTD0 557 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 ATG14Q6ZNE5 492 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 LONP2Q86WA8 852 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 MFN1Q8IWA4 741 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 ZNF781Q8N8C0 355 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 MAGEC3Q8TD91 643 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 NECAB3Q96P71 396 aaPredicted RBP17.75■□□□□ 0.43
SNX1-208ENST00000559844 CCDC106Q9BWC9 280 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 ARMCX1Q9P291 453 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 LHX3Q9UBR4 397 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 BAIAP2L1Q9UHR4 511 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 CLEC4EQ9ULY5 219 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 DUSP12Q9UNI6 340 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 RPL26L1Q9UNX3 145 aaKnown RBP17.75■□□□□ 0.43
SNX1-208ENST00000559844 SPO11Q9Y5K1 396 aa17.75■□□□□ 0.43
SNX1-208ENST00000559844 F5P12259 2224 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 ZNF195O14628 629 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 NPHS1O60500 1241 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 GJA4P35212 333 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 SOX9P48436 509 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 TYSND1Q2T9J0 566 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 GAB4Q2WGN9 574 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 TECRLQ5HYJ1 363 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 RETSATQ6NUM9 610 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 LINGO4Q6UY18 593 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 DNASE1L2Q92874 299 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 UTP4Q969X6 686 aaKnown RBP17.74■□□□□ 0.43
SNX1-208ENST00000559844 UBXN10Q96LJ8 280 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 NSMCE3Q96MG7 304 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 C2orf49Q9BVC5 232 aaPredicted RBP17.74■□□□□ 0.43
SNX1-208ENST00000559844 SUDS3Q9H7L9 328 aaPredicted RBP17.74■□□□□ 0.43
SNX1-208ENST00000559844 TRPV5Q9NQA5 729 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 SLC2A4RGQ9NR83 387 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 HEBP1Q9NRV9 189 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.74■□□□□ 0.43
SNX1-208ENST00000559844 HACD3Q9P035 362 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 TAGLN3Q9UI15 199 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 VPS51Q9UID3 782 aa17.74■□□□□ 0.43
SNX1-208ENST00000559844 BUD23O43709 281 aaKnown RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 WFS1O76024 890 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 WISP3O95389 354 aaPredicted RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 LPOP22079 712 aaPredicted RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 FDXRP22570 491 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 PMLP29590 882 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 PFKPQ01813 784 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 MAVSQ7Z434 540 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 METTL3Q86U44 580 aaKnown RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 LDB1Q86U70 411 aaPredicted RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 C12orf40Q86WS4 652 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 WFDC5Q8TCV5 224 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 STON2Q8WXE9 905 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 ALG14Q96F25 216 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 TCF12Q99081 682 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 CD320Q9NPF0 282 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 VTI1BQ9UEU0 232 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 PCDHGC4Q9Y5F7 938 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 ANKRD66B4E2M5 251 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 PFDN6O15212 129 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 GYG2O15488 501 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 CCDC166P0CW27 439 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 RPL14P50914 215 aaKnown RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 STC1P52823 247 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 NAGLUP54802 743 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 AP1S1P61966 158 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 PTPRCAPQ14761 206 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 EPGNQ6UW88 154 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 PIWIL4Q7Z3Z4 852 aaKnown RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 SUGP1Q8IWZ8 645 aaKnown RBP17.73■□□□□ 0.43
SNX1-208ENST00000559844 MDGA1Q8NFP4 955 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 ACDQ96AP0 544 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 NCKIPSDQ9NZQ3 722 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 VPS9D1Q9Y2B5 631 aa17.73■□□□□ 0.43
SNX1-208ENST00000559844 NCOR1O75376 2440 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 SPECC1L-ADORA2AF8WAN1 911 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 DIAPH2O60879 1101 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 TULP3O75386 442 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 AOC1P19801 751 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 CDKN2DP55273 166 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 TRAF2Q12933 501 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 METTL21CQ5VZV1 264 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 SLC22A9Q8IVM8 553 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 ETFBKMTQ8IXQ9 262 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 SPATA6LQ8N4H0 392 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 OR4K2Q8NGD2 314 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 CHFRQ96EP1 664 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 CNDP1Q96KN2 507 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 COG4Q9H9E3 785 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 KIAA1522Q9P206 1035 aaPredicted RBP17.72■□□□□ 0.43
SNX1-208ENST00000559844 CRYL1Q9Y2S2 319 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 PIAS3Q9Y6X2 628 aa17.72■□□□□ 0.43
SNX1-208ENST00000559844 TRIOO75962 3097 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms