RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ACTR3BQ9P1U1 418 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 WARS2Q9UGM6 360 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 ZDHHC2Q9UIJ5 367 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 UBQLN1Q9UMX0 589 aaKnown RBP10.87□□□□□ -0.67
USP3-206ENST00000558157 PSAT1Q9Y617 370 aa10.87□□□□□ -0.67
USP3-206ENST00000558157 PITPNM1O00562 1244 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PTGESO14684 152 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 MRASO14807 208 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 TIMM44O43615 452 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 NRP2O60462 931 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 NPHS1O60500 1241 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 NBNO60934 754 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 GABARAPO95166 117 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 METTL18O95568 372 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ALBP02768 609 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 POLBP06746 335 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 UMPSP11172 480 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 TFE3P19532 575 aaPredicted RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 ATP6V1B2P21281 511 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 CRHBPP24387 322 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 CASP3P42574 277 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ASPAP45381 313 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 NR2C2P49116 596 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ATP4BP51164 291 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ZNF143P52747 638 aaPredicted RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 IST1P53990 364 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 TLE2Q04725 743 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 TOP3AQ13472 1001 aaPredicted RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 FASTKQ14296 549 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 GPNMBQ14956 572 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 SUZ12Q15022 739 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 CTF1Q16619 201 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 MRPL10Q7Z7H8 261 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 TBC1D21Q8IYX1 336 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 SPARTQ8N0X7 666 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PLD6Q8N2A8 252 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 AFAP1L2Q8N4X5 818 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PAPD5Q8NDF8 572 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 OR7A2PQ8NGA2 310 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 RDH12Q96NR8 316 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ING2Q9H160 280 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 GOLGA2P5Q9HBQ8 144 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 LRRC4Q9HBW1 653 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 CCDC177Q9NQR7 707 aaPredicted RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 ZNF358Q9NW07 568 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ABCD2Q9UBJ2 740 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 MTF2Q9Y483 593 aaPredicted RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 SCN1AP35498 2009 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 A8MU76 341 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 SDHDO14521 159 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 DDHD2O94830 711 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 FKBP9O95302 570 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 BMP4P12644 408 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 IMPDH1P20839 514 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ATICP31939 592 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 RFC2P35250 354 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ETFBP38117 255 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 NR4A2P43354 598 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 RAP1GAPP47736 663 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 MAPK10P53779 464 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 COPZ1P61923 177 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 RBP5P82980 135 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 SOX4Q06945 474 aaPredicted RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 VAC14Q08AM6 782 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PSMD5Q16401 504 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 CCDC58Q4VC31 144 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 BOLA3Q53S33 107 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 ZNF667Q5HYK9 610 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PRSS48Q7RTY5 328 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 XYLT1Q86Y38 959 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 CMTR2Q8IYT2 770 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 CLIP4Q8N3C7 705 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PQLC3Q8N755 202 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 RHOXF1Q8NHV9 184 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 HDAC10Q969S8 669 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.86□□□□□ -0.672e-7■■■■□ 19.6
USP3-206ENST00000558157 CERS2Q96G23 380 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 HPDLQ96IR7 371 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 PAWRQ96IZ0 340 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 EGLN2Q96KS0 407 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 TSNARE1Q96NA8 513 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 GAD1Q99259 594 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 DHRS9Q9BPW9 319 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 CNPY3Q9BT09 278 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 C11orf49Q9H6J7 331 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 NOL6Q9H6R4 1146 aaKnown RBP10.86□□□□□ -0.67
USP3-206ENST00000558157 BAG5Q9UL15 447 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 AURKCQ9UQB9 309 aa10.86□□□□□ -0.67
USP3-206ENST00000558157 A0A0U1RQF3 1178 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 CCDC78A2IDD5 438 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 M0R3G1 203 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 TAF4O00268 1085 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 PRPSAP2O60256 369 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 UPK1BO75841 260 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 CLIC3O95833 236 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 LTFP02788 710 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 LRPAP1P30533 357 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 AFF1P51825 1210 aaKnown RBP10.85□□□□□ -0.67
USP3-206ENST00000558157 SLC7A2P52569 658 aa10.85□□□□□ -0.67
USP3-206ENST00000558157 CSE1LP55060 971 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms