RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 FRMD8Q9BZ67 464 aaPredicted RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 CAAP1Q9H8G2 361 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 CYP4F12Q9HCS2 524 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 FGF22Q9HCT0 170 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 MRPL40Q9NQ50 206 aaKnown RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 EVA1BQ9NVM1 165 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 NCKIPSDQ9NZQ3 722 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 NFKBIL1Q9UBC1 381 aaPredicted RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 MOSPD1Q9UJG1 213 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 CNOT6Q9ULM6 557 aaKnown RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 TTC7AQ9ULT0 858 aaPredicted RBP10.63□□□□□ -0.71
LINC00239-201ENST00000556973 DOLKQ9UPQ8 538 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 SLC17A4Q9Y2C5 497 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 PCDHGA1Q9Y5H4 931 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 SCN8AQ9UQD0 1980 aa10.63□□□□□ -0.71
LINC00239-201ENST00000556973 CEP250Q9BV73 2442 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 C2orf81A6NN90 581 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 FADS2P1A8MWK0 482 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 CES2O00748 559 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 INPP4BO15327 924 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PPFIA2O75334 1257 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 DKK1O94907 266 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 FUCA1P04066 466 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 ATP1A1P05023 1023 aaKnown RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 IVLP07476 585 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 CKMT1AP12532 417 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 BPIP17213 487 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PMLP29590 882 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 FDFT1P37268 417 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 DUSP3P51452 185 aaPredicted RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PDE1BQ01064 536 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 FOXC1Q12948 553 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 ILKQ13418 452 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 TAF1AQ15573 450 aaPredicted RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 DEFB133Q30KQ1 61 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PDPK2PQ6A1A2 396 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 DENND5AQ6IQ26 1287 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 RAB44Q7Z6P3 723 aaPredicted RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 TTC30BQ8N4P2 665 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 TRAM1L1Q8N609 369 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PDCD7Q8N8D1 485 aaKnown RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PNPLA1Q8N8W4 532 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 CCDC89Q8N998 374 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 APOLD1Q96LR9 279 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 NAP1L3Q99457 506 aaPredicted RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 TBL1YQ9BQ87 522 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 SPATA16Q9BXB7 569 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 CLPBQ9H078 707 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 LRRC40Q9H9A6 602 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 TRIM39Q9HCM9 518 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 BPIFA1Q9NP55 256 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 TRNAU1APQ9NX07 287 aaKnown RBP10.62□□□□□ -0.71
LINC00239-201ENST00000556973 IL17CQ9P0M4 197 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 PKP3Q9Y446 797 aa10.62□□□□□ -0.71
LINC00239-201ENST00000556973 SPTBN4Q9H254 2564 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 USP27XA6NNY8 438 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 ERI2A8K979 691 aaKnown RBP10.61□□□□□ -0.71
LINC00239-201ENST00000556973 SLC25A14O95258 325 aaPredicted RBP10.61□□□□□ -0.71
LINC00239-201ENST00000556973 ASMTLO95671 621 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 CRTAMO95727 393 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 AP2A1O95782 977 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 IFNB1P01574 187 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 SLC4A1P02730 911 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 LPOP22079 712 aaPredicted RBP10.61□□□□□ -0.71
LINC00239-201ENST00000556973 POLD2P49005 469 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 RPIAP49247 311 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 SHC2P98077 582 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 DAB2P98082 770 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 DNAJC3Q13217 504 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 MSLNQ13421 630 aaPredicted RBP10.61□□□□□ -0.71
LINC00239-201ENST00000556973 PEX6Q13608 980 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 SPARCL1Q14515 664 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 C6orf132Q5T0Z8 1188 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 ALS2CLQ60I27 953 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 KCTD16Q68DU8 428 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 NYAP1Q6ZVC0 841 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 GSTA5Q7RTV2 222 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 TAF8Q7Z7C8 310 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 LINC00523Q86TU6 105 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 GPBAR1Q8TDU6 330 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 VPS35Q96QK1 796 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 OSBPL9Q96SU4 736 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 C19orf43Q9BQ61 176 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 APOL2Q9BQE5 337 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 BOCQ9BWV1 1114 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 TMEM168Q9H0V1 697 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 RMI1Q9H9A7 625 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 CARS2Q9HA77 564 aaKnown RBP10.61□□□□□ -0.71
LINC00239-201ENST00000556973 ETNK1Q9HBU6 452 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 VPS18Q9P253 973 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 PAK5Q9P286 719 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 ANGPTL2Q9UKU9 493 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 PYCARDQ9ULZ3 195 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 SUFUQ9UMX1 484 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 SNX12Q9UMY4 172 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 WASF3Q9UPY6 502 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 TMEM98Q9Y2Y6 226 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 ZNF106Q9H2Y7 1883 aaKnown RBP10.61□□□□□ -0.71
LINC00239-201ENST00000556973 PTPRBP23467 1997 aa10.61□□□□□ -0.71
LINC00239-201ENST00000556973 CABIN1Q9Y6J0 2220 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms