RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TRIM74Q86UV6 250 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 RAVER1Q8IY67 606 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 TRAM1L1Q8N609 369 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 SUMF1Q8NBK3 374 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 OR13J1Q8NGT2 312 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 C1orf216Q8TAB5 229 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 GDAP1Q8TB36 358 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 HDAC10Q969S8 669 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 KLHDC7BQ96G42 594 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 CDKN2AIPNLQ96HQ2 116 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 ZSCAN5AQ9BUG6 496 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 FAM96AQ9H5X1 160 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 UGT1A7Q9HAW7 530 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 UGT1A10Q9HAW8 530 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 UGT1A8Q9HAW9 530 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 FSCN3Q9NQT6 498 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 GDF3Q9NR23 364 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 ZDHHC18Q9NUE0 388 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 NCDNQ9UBB6 729 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 MTRF1LQ9UGC7 380 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 APPL1Q9UKG1 709 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 NFU1Q9UMS0 254 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 HS3ST3A1Q9Y663 406 aa13.97□□□□□ -0.17
VIPAS39-208ENST00000556412 A0A1B0GVT2 93 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 MAGEB16A2A368 324 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 PRR5-ARHGAP8B1AHC4 643 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 PATE3B3GLJ2 98 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 CACNB4O00305 520 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 SRP72O76094 671 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 SOD1P00441 154 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 WNT1P04628 370 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 PGAM1P18669 254 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 DPP6P42658 865 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 CUL1Q13616 776 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 FASTKD3Q14CZ7 662 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 ATP13A5Q4VNC0 1218 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 DOK6Q6PKX4 331 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 CAPN12Q6ZSI9 719 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 ABI3BPQ7Z7G0 1075 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 IGDCC3Q8IVU1 814 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 OTUD6BQ8N6M0 293 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 FBXO36Q8NEA4 188 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 SKA1Q96BD8 255 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 EBNA1BP2Q99848 306 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 APOOQ9BUR5 198 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 ASB8Q9H765 288 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 MRM3Q9HC36 420 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 ARFGAP3Q9NP61 516 aa13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 ZC3H7BQ9UGR2 993 aaKnown RBP13.96□□□□□ -0.17
VIPAS39-208ENST00000556412 FAM237BA0A1B0GVD1 139 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 CCDC162PA2VCL2 907 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 BHMG1C9JSJ3 638 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 VAPBO95292 243 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 GOT2P00505 430 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 PYGLP06737 847 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 POLBP06746 335 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 RETP07949 1114 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 PAMP19021 973 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 ITGALP20701 1170 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 RABIFP47224 123 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 PFN3P60673 137 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 TUBB4BP68371 445 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 PEX6Q13608 980 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 ITGA9Q13797 1035 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 DUOXA1Q1HG43 343 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 ANKRD20A4Q4UJ75 823 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 TRIM61Q5EBN2 209 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 TAS2R42Q7RTR8 314 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 MFSD2AQ8NA29 543 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 ZNF398Q8TD17 642 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 FUBP1Q96AE4 644 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 FMO2Q99518 471 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 LGR4Q9BXB1 951 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 PHPT1Q9NRX4 125 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 TREX1Q9NSU2 369 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 IL1RAPL1Q9NZN1 696 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 NFKBIL1Q9UBC1 381 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 CRLS1Q9UJA2 301 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 MOSPD1Q9UJG1 213 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 PCDHGA5Q9Y5G8 931 aa13.95□□□□□ -0.18
VIPAS39-208ENST00000556412 A0A1W2PR77 199 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 GOLGA8KD6RF30 607 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 GOLGA8TH3BQL2 631 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TLR4O00206 839 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 GAPDHSO14556 408 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 SLC25A14O95258 325 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 PRSS56P0CW18 603 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 HTR1BP28222 390 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 HOXD12P35452 270 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 XIAPP98170 497 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 CDK3Q00526 305 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 NFATC2Q13469 925 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 TCEAL6Q6IPX3 200 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 AFTPHQ6ULP2 937 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 ADAMTSL4Q6UY14 1074 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 RABEPKQ7Z6M1 372 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 GSPT2Q8IYD1 628 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 GPR161Q8N6U8 529 aaKnown RBP13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 CEP76Q8TAP6 659 aa13.94□□□□□ -0.18
VIPAS39-208ENST00000556412 PYROXD1Q8WU10 500 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms