RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 CCDC70Q6NSX1 233 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 NYAP1Q6ZVC0 841 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 SPRED1Q7Z699 444 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 CLEC14AQ86T13 490 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 ARL14Q8N4G2 192 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 HNRNPLLQ8WVV9 542 aaKnown RBP11.77□□□□□ -0.53
VRK1-204ENST00000555351 P3H4Q92791 437 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 SCAMP4Q969E2 229 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 ATXN7L3BQ96GX2 97 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 OR2M4Q96R27 311 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 WDR24Q96S15 920 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 ZSCAN5AQ9BUG6 496 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 FAM83DQ9H4H8 585 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 TRABDQ9H4I3 376 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 ZFYVE1Q9HBF4 777 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 GLOD4Q9HC38 313 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 GOLGA6AQ9NYA3 693 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 TAAR2Q9P1P5 351 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 LRIT1Q9P2V4 623 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 RABGEF1Q9UJ41 708 aa11.77□□□□□ -0.53
VRK1-204ENST00000555351 URB1O60287 2271 aaKnown RBP11.76□□□□□ -0.53
VRK1-204ENST00000555351 hCG_1818297A0A087WSY0 165 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 A0A1W2PQM1 296 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 CDRT15L2A8MXV6 281 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 B4DGG1 531 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 NDST3O95803 873 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 RPLP0P05388 317 aaKnown RBP11.76□□□□□ -0.53
VRK1-204ENST00000555351 ITGA2BP08514 1039 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 PTPN3P26045 913 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 PTPN7P35236 360 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 GNPDA1P46926 289 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 INHBCP55103 352 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 CCL7P80098 99 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 CTBSQ01459 385 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 ZFP36L1Q07352 338 aaKnown RBP11.76□□□□□ -0.53
VRK1-204ENST00000555351 C19orf48Q6RUI8 117 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 NPNTQ6UXI9 565 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 RFLNAQ6ZTI6 216 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 BBS12Q6ZW61 710 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 TMC3Q7Z5M5 1100 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 GALNT13Q8IUC8 556 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 TXLNBQ8N3L3 684 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.76□□□□□ -0.53
VRK1-204ENST00000555351 CCL4L1Q8NHW4 92 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 DTX3LQ8TDB6 740 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 ZDHHC1Q8WTX9 485 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 PRR11Q96HE9 360 aaPredicted RBP11.76□□□□□ -0.53
VRK1-204ENST00000555351 AGAP3Q96P47 875 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 DCBLD2Q96PD2 775 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 DPYSL5Q9BPU6 564 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 B3GNT4Q9C0J1 378 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 SPATS2LQ9NUQ6 558 aaKnown RBP11.76□□□□□ -0.53
VRK1-204ENST00000555351 CD84Q9UIB8 345 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 TRHDEQ9UKU6 1024 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 CNOT6Q9ULM6 557 aaKnown RBP11.76□□□□□ -0.53
VRK1-204ENST00000555351 SATB2Q9UPW6 733 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 SSUH2Q9Y2M2 353 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 HYOU1Q9Y4L1 999 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 PCDHGA7Q9Y5G6 932 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 PCDHA3Q9Y5H8 950 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 RNF215Q9Y6U7 377 aa11.76□□□□□ -0.53
VRK1-204ENST00000555351 RP1P56715 2156 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 LOC285095A0A1B0GVY8 99 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 A0A1W2PNU3 283 aaPredicted RBP11.75□□□□□ -0.53
VRK1-204ENST00000555351 CCDC66A2RUB6 948 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 APOC4-APOC2K7ER74 178 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 PJA2O43164 708 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 DNAJC6O75061 913 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 APOC2P02655 101 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 CTNNA1P35221 906 aaKnown RBP11.75□□□□□ -0.53
VRK1-204ENST00000555351 FASLGP48023 281 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 POLD2P49005 469 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 CLCNKAP51800 687 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 DYNLT1P63172 113 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 B4GALNT1Q00973 533 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 WASHC5Q12768 1159 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 C3orf38Q5JPI3 329 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 ZDHHC20Q5W0Z9 365 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 DAAM2Q86T65 1068 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 AVL9Q8NBF6 648 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 LRRN4Q8WUT4 740 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 UBE2Q2Q8WVN8 375 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 QKIQ96PU8 341 aaKnown RBP eCLIP11.75□□□□□ -0.532e-6■■■■■ 33.8
VRK1-204ENST00000555351 PLEKHG4BQ96PX9 1271 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 SMIM14Q96QK8 99 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 FCRL5Q96RD9 977 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 AGAP2Q99490 1192 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 FERMT1Q9BQL6 677 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 RBSNQ9H1K0 784 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 CARD9Q9H257 536 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.75□□□□□ -0.53
VRK1-204ENST00000555351 HACD3Q9P035 362 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 SEPT10Q9P0V9 454 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 IMPACTQ9P2X3 320 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 FAM153AQ9UHL3 310 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 ACSL6Q9UKU0 697 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 ST14Q9Y5Y6 855 aa11.75□□□□□ -0.53
VRK1-204ENST00000555351 A0A0U1RQS6 177 aa11.74□□□□□ -0.53
VRK1-204ENST00000555351 RHPN2P1A8MT19 583 aa11.74□□□□□ -0.53
VRK1-204ENST00000555351 FADS2P1A8MWK0 482 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms