RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SMIM24O75264 130 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 CEBPBP17676 345 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 KCNA5P22460 613 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 GKP32189 559 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 CCR10P46092 362 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 ATP6V0D1P61421 351 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 GALNT1Q10472 559 aaPredicted RBP26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 GPM6BQ13491 265 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 SETMARQ53H47 684 aaPredicted RBP26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 ZNF697Q5TEC3 545 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 VWA5B1Q5TIE3 1220 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 KIAA0907Q7Z7F0 614 aaPredicted RBP26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 SPNS2Q8IVW8 549 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 PAF1Q8N7H5 531 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 PPIL1Q9Y3C6 166 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 MTF2Q9Y483 593 aaPredicted RBP26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 HCFC2Q9Y5Z7 792 aa26.22■■□□□ 1.79
CCDC88C-205ENST00000553403 PER2O15055 1255 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 GRID2O43424 1007 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 VPS26AO75436 327 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 TPBGLP0DKB5 382 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 IMPDH1P20839 514 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 HNF1BP35680 557 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 ERVK-21P61565 698 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 ECT2LQ008S8 904 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 RAD51Q06609 339 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 CARD16Q5EG05 197 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 LY6G5CQ5SRR4 150 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 LONP2Q86WA8 852 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 ADGRG2Q8IZP9 1017 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 NKAPQ8N5F7 415 aaKnown RBP26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 VOPP1Q96AW1 172 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 ECHDC3Q96DC8 303 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 L3HYPDHQ96EM0 354 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 TRMOQ9BU70 441 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 EML4Q9HC35 981 aaKnown RBP26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 CYP4F12Q9HCS2 524 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 ACSS2Q9NR19 701 aa26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 MRPS23Q9Y3D9 190 aaKnown RBP26.21■■□□□ 1.79
CCDC88C-205ENST00000553403 C1orf232A0A0U1RR37 186 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 CCDC189A1A4V9 331 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 PRR5-ARHGAP8B1AHC4 643 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 POP4O95707 220 aaKnown RBP26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 ESR1P03372 595 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 ENO1P06733 434 aaKnown RBP26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 WEE1P30291 646 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 PPARGP37231 505 aaPredicted RBP26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 ARHGAP8P85298 464 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 SLC9B1Q4ZJI4 515 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 PAQR3Q6TCH7 311 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 TAS2R42Q7RTR8 314 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 PLPP6Q8IY26 295 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 KIRREL3Q8IZU9 778 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 CBARPQ8N350 705 aaPredicted RBP26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 GRIN3AQ8TCU5 1115 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 MAPK15Q8TD08 544 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 SUV39H2Q9H5I1 410 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 APPL1Q9UKG1 709 aa26.2■■□□□ 1.78
CCDC88C-205ENST00000553403 A0A0U1RQS6 177 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 A0A1W2PQ67 120 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 CA3P07451 260 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 KCNC1P48547 511 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 PTPN5P54829 565 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 UBAP2LQ14157 1087 aaKnown RBP26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 CTSL3PQ5NE16 218 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 KDM1BQ8NB78 822 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 KCNJ9Q92806 393 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 KIAA1191Q96A73 305 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 FAR2Q96K12 515 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 ZNF641Q96N77 438 aaPredicted RBP26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 GPR21Q99679 349 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 PCDHB1Q9Y5F3 818 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 SPECC1L-ADORA2AF8WAN1 911 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 GYG2O15488 501 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 ATP6V1G2O95670 118 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 SP100P23497 879 aaPredicted RBP26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 SNCBQ16143 134 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 LYPLAL1Q5VWZ2 237 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 RINLQ6ZS11 566 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 FRMD7Q6ZUT3 714 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 ADIPOR2Q86V24 386 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 AGR3Q8TD06 166 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 TTC1Q99614 292 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 MIPEPQ99797 713 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 CCDC28BQ9BUN5 200 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 P2RY12Q9H244 342 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 TCF7L2Q9NQB0 619 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 SDAD1Q9NVU7 687 aaKnown RBP eCLIP26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 FAM50BQ9Y247 325 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 WNT6Q9Y6F9 365 aa26.19■■□□□ 1.78
CCDC88C-205ENST00000553403 GRXCR1A8MXD5 290 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 OR1I1O60431 355 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 PAPLNO95428 1278 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 CCNHP51946 323 aaPredicted RBP26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 SHHQ15465 462 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 OR4D1Q15615 310 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 ACCSLQ4AC99 568 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 GRAMD4Q6IC98 578 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 UGT3A1Q6NUS8 523 aa26.18■■□□□ 1.78
CCDC88C-205ENST00000553403 SNX20Q7Z614 316 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms