RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MPP5Q8N3R9 675 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 ENDOVQ8N8Q3 282 aaKnown RBP5.48□□□□□ -1.53
LIMA1-203ENST00000547825 KLHDC9Q8NEP7 349 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 PPHLN1Q8NEY8 458 aaKnown RBP5.48□□□□□ -1.53
LIMA1-203ENST00000547825 ZFP28Q8NHY6 868 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 BLOC1S5Q8TDH9 187 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 DENND1AQ8TEH3 1009 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 FNIP1Q8TF40 1166 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 WNT8BQ93098 351 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 COX4I2Q96KJ9 171 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 RNF157Q96PX1 679 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 OR52B2Q96RD2 323 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 CPXM1Q96SM3 734 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 KCTD14Q9BQ13 255 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-203ENST00000547825 PDCD2LQ9BRP1 358 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 SPATC1LQ9H0A9 340 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 POMKQ9H5K3 350 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 DPP3Q9NY33 737 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 SCN3BQ9NY72 215 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 CHD7Q9P2D1 2997 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 COPG2Q9UBF2 871 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 NUDT5Q9UKK9 219 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 NDUFAF1Q9Y375 327 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 EMC9Q9Y3B6 208 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 ATP8B3O60423 1300 aa5.48□□□□□ -1.53
LIMA1-203ENST00000547825 UNC80Q8N2C7 3258 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 LCE2BO14633 110 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TRDMT1O14717 391 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TADA2AO75478 443 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 NADKO95544 446 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 LTFP02788 710 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ZNF37AP17032 561 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 UGT1A6P19224 532 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 UGT1A1P22309 533 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 UGT1A4P22310 534 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ACAT1P24752 427 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CST5P28325 142 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 UGT1A3P35503 534 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 UGT1A5P35504 534 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 HSD17B4P51659 736 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 YWHAZP63104 245 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MYBPC3Q14896 1274 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SLC9B1Q4ZJI4 515 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PAN2Q504Q3 1202 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 IL23RQ5VWK5 629 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SLC39A4Q6P5W5 647 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM110Q86TL2 294 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GATAD2AQ86YP4 633 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 RORBQ92753 470 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 NSMCE2Q96MF7 247 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PKP2Q99959 881 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SNRNP25Q9BV90 132 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 KATNAL1Q9BW62 490 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 EIF2AQ9BY44 585 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 RAD21L1Q9H4I0 556 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PRDM12Q9H4Q4 367 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MID1IP1Q9NPA3 183 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PNPLA3Q9NST1 481 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 COL20A1Q9P218 1284 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 XPR1Q9UBH6 696 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 BTRCQ9Y297 605 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 FADS3Q9Y5Q0 445 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CLUHO75153 1309 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SNAI1O95863 264 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 EDN1P05305 212 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CAPN1P07384 714 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CYP4B1P13584 511 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CHRM3P20309 590 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CCR10P46092 362 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CYP4F2P78329 520 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PIN1Q13526 163 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 DPY19L1Q2PZI1 675 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MYLK3Q32MK0 819 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 LSM12Q3MHD2 195 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ATP6AP1LQ52LC2 224 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SAMD4BQ5PRF9 694 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CERCAMQ5T4B2 595 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SPESP1Q6UW49 350 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CHPFQ8IZ52 775 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TAGAPQ8N103 731 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 C12orf50Q8NA57 414 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 ATG16L2Q8NAA4 619 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TNIP2Q8NFZ5 429 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 OR7A2PQ8NGA2 310 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SOCS4Q8WXH5 440 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 NDRG1Q92597 394 aaKnown RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 TMIGD2Q96BF3 282 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 MTERF3Q96E29 417 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CERS2Q96G23 380 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 PGLYRP2Q96PD5 576 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 HBEGFQ99075 208 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 APOL5Q9BWW9 433 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 GATA5Q9BWX5 397 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 OSBPL6Q9BZF3 934 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CDH19Q9H159 772 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 EPS8L2Q9H6S3 715 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 VPS45Q9NRW7 570 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 SYBUQ9NX95 663 aa5.47□□□□□ -1.53
LIMA1-203ENST00000547825 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.47□□□□□ -1.53
LIMA1-203ENST00000547825 CD274Q9NZQ7 290 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms