RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CACHD1Q5VU97 1274 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 B3GNTL1Q67FW5 361 aaPredicted RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 PRSS42Q7Z5A4 293 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 DNAAF5Q86Y56 855 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 GALNT13Q8IUC8 556 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ZNF683Q8IZ20 524 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 UBR7Q8N806 425 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 INPP5DQ92835 1189 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 TEX101Q9BY14 249 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 CBX8Q9HC52 389 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 AKAP9Q99996 3911 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 KIR2DS5A0A0G2JLQ3 304 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 A0A0G2JNG1 304 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 GOLGA6CA6NDK9 693 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 GOLGA6BA6NDN3 693 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 KIR2DS3K7RE56 304 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 DAB1O75553 588 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 PIGNO95427 931 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 F13A1P00488 732 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 GOLGA6DP0CG33 693 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 ESRRAP11474 423 aaPredicted RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 ACVRL1P37023 503 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 PBX1P40424 430 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 GFERP55789 205 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 CDK3Q00526 305 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 OTUD4Q01804 1114 aaKnown RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 LRMPQ12912 555 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 STK4Q13043 487 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 KIR2DS5Q14953 304 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 FOXD4L5Q5VV16 416 aaPredicted RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 IRAK1BP1Q5VVH5 260 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 DOK6Q6PKX4 331 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 LIPIQ6XZB0 460 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 GALNT16Q8N428 558 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 ENDOVQ8N8Q3 282 aaKnown RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 PPP4R1Q8TF05 950 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 FOXD4L4Q8WXT5 416 aaPredicted RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 ZDHHC12Q96GR4 267 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 NT5C1BQ96P26 610 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 GOLGA6AQ9NYA3 693 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 PPARGC1AQ9UBK2 798 aaKnown RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 TCFL5Q9UL49 500 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 NOVA2Q9UNW9 492 aaKnown RBP9.08□□□□□ -0.96
USP28-205ENST00000537706 SLC17A4Q9Y2C5 497 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 SNX10Q9Y5X0 201 aa9.08□□□□□ -0.96
USP28-205ENST00000537706 CLDN14O95500 239 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 CXCR3P49682 368 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 DEUP1Q05D60 604 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 ATP1A4Q13733 1029 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 SLC39A14Q15043 492 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 STK38Q15208 465 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 INO80DQ53TQ3 878 aaPredicted RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 RAET1GQ6H3X3 334 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 PWWP2BQ6NUJ5 590 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 GFRALQ6UXV0 394 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 LEKR1Q6ZMV7 388 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 TMEM126BQ8IUX1 230 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 CEP57L1Q8IYX8 460 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 KIAA0895Q8NCT3 520 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 TUBGCP5Q96RT8 1024 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 EDARQ9UNE0 448 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 MTMR6Q9Y217 621 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 PADI2Q9Y2J8 665 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 ANKHD1Q8IWZ3 2542 aaKnown RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 KDELR3O43731 214 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 CREB3O43889 395 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 RAMP2O60895 175 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 GRAP2O75791 330 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 UBXN7O94888 489 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 TEAD1P28347 426 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 CASP1P29466 404 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 SERPINA4P29622 427 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 NASPP49321 788 aaPredicted RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 SULT1E1P49888 294 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 FOLH1Q04609 750 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 CUL4BQ13620 913 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 LAMB3Q13751 1172 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 ZNF169Q14929 603 aaPredicted RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 TAF5Q15542 800 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 DCAF17Q5H9S7 520 aaPredicted RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 DENND1BQ6P3S1 775 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 IYDQ6PHW0 289 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 TMEM207Q6UWW9 146 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 C11orf57Q6ZUT1 292 aaPredicted RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 TRIM48Q8IWZ4 208 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 DNAJB14Q8TBM8 379 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 GPT2Q8TD30 523 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 NUDT8Q8WV74 236 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 KLHL6Q8WZ60 621 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 NINJ1Q92982 152 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 SLX1AQ9BQ83 275 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 ZSWIM1Q9BR11 485 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 TBC1D10AQ9BXI6 508 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 NLNQ9BYT8 704 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 CXXC4Q9H2H0 198 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 UCK1Q9HA47 277 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 AJAP1Q9UKB5 411 aaPredicted RBP9.07□□□□□ -0.96
USP28-205ENST00000537706 COQ4Q9Y3A0 265 aa9.07□□□□□ -0.96
USP28-205ENST00000537706 MASP2O00187 686 aa9.06□□□□□ -0.96
USP28-205ENST00000537706 NELFEP18615 380 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms