RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZC2HC1CQ53FD0 456 aaPredicted RBP2.61□□□□□ -1.99
NUP54-208ENST00000508604 SLC46A3Q7Z3Q1 461 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 GPR180Q86V85 440 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 CACNA2D3Q8IZS8 1091 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 PPHLN1Q8NEY8 458 aaKnown RBP2.61□□□□□ -1.99
NUP54-208ENST00000508604 CLSTN3Q9BQT9 956 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 PAGR1Q9BTK6 254 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 RAD21L1Q9H4I0 556 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 HINT3Q9NQE9 182 aaKnown RBP2.61□□□□□ -1.99
NUP54-208ENST00000508604 ERVK-11Q9UQG0 969 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 DNAJC16Q9Y2G8 782 aa2.61□□□□□ -1.99
NUP54-208ENST00000508604 IPO5O00410 1097 aaKnown RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 NR3C1P04150 777 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 GATA1P15976 413 aaPredicted RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 TYMPP19971 482 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ADD2P35612 726 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 NR2C2P49116 596 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 CSNK2A1P68400 391 aaPredicted RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 PPP2R5BQ15173 497 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ANKRD1Q15327 319 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 SGO1Q5FBB7 561 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 BRAT1Q6PJG6 821 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 SLC35F3Q8IY50 421 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 PCDH20Q8N6Y1 951 aaKnown RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 CSNK2A3Q8NEV1 391 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 AGAP3Q96P47 875 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 MMP25Q9NPA2 562 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 MARCH4Q9P2E8 410 aaPredicted RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 ZCWPW2A0A1B0GU75 182 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 SPINT2O43291 252 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 FAM155BO75949 473 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 IRF1P10914 325 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 CSF2RAP15509 400 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 RIGQ13278 110 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ADCK5Q3MIX3 580 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ASPRV1Q53RT3 343 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ANKRD45Q5TZF3 282 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ADGRG6Q86SQ4 1221 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 C11orf65Q8NCR3 313 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 OR2T6Q8NHC8 308 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 THAP6Q8TBB0 222 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ORAI1Q96D31 301 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 EIF2AK1Q9BQI3 630 aaKnown RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 SYT11Q9BT88 431 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 CRB3Q9BUF7 120 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 KCNN2Q9H2S1 579 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 ARNT2Q9HBZ2 717 aa2.6□□□□□ -1.99
NUP54-208ENST00000508604 EXOGQ9Y2C4 368 aaKnown RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 LSM4Q9Y4Z0 139 aaKnown RBP2.6□□□□□ -1.99
NUP54-208ENST00000508604 A0A087X002 238 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FAM90A7PA6NKC0 464 aa2.59□□□□□ -2
NUP54-208ENST00000508604 A6NL46 340 aa2.59□□□□□ -2
NUP54-208ENST00000508604 DUXAA6NLW8 204 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FAM90A22PA8MWA6 464 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FAM90A12PA8MX19 464 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FAM90A23PA8MXZ1 464 aa2.59□□□□□ -2
NUP54-208ENST00000508604 EIF3DO15371 548 aaKnown RBP eCLIP2.59□□□□□ -2
NUP54-208ENST00000508604 CCR10P46092 362 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FASLGP48023 281 aa2.59□□□□□ -2
NUP54-208ENST00000508604 BMXP51813 675 aa2.59□□□□□ -2
NUP54-208ENST00000508604 SORDQ00796 357 aa2.59□□□□□ -2
NUP54-208ENST00000508604 ACVR2BQ13705 512 aa2.59□□□□□ -2
NUP54-208ENST00000508604 C2orf68Q2NKX9 166 aa2.59□□□□□ -2
NUP54-208ENST00000508604 KIAA1644Q3SXP7 199 aa2.59□□□□□ -2
NUP54-208ENST00000508604 XKR6Q5GH73 641 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FRG2Q64ET8 278 aa2.59□□□□□ -2
NUP54-208ENST00000508604 FBXO46Q6PJ61 603 aaPredicted RBP2.59□□□□□ -2
NUP54-208ENST00000508604 SH2D5Q6ZV89 423 aa2.59□□□□□ -2
NUP54-208ENST00000508604 ADSSL1Q8N142 457 aa2.59□□□□□ -2
NUP54-208ENST00000508604 BMPERQ8N8U9 685 aa2.59□□□□□ -2
NUP54-208ENST00000508604 USP38Q8NB14 1042 aa2.59□□□□□ -2
NUP54-208ENST00000508604 TNIP2Q8NFZ5 429 aa2.59□□□□□ -2
NUP54-208ENST00000508604 RDM1Q8NG50 284 aa2.59□□□□□ -2
NUP54-208ENST00000508604 HUS1BQ8NHY5 278 aa2.59□□□□□ -2
NUP54-208ENST00000508604 SPPL3Q8TCT6 385 aa2.59□□□□□ -2
NUP54-208ENST00000508604 SLC38A5Q8WUX1 472 aa2.59□□□□□ -2
NUP54-208ENST00000508604 DNAAF4Q8WXU2 420 aa2.59□□□□□ -2
NUP54-208ENST00000508604 ABHD8Q96I13 439 aa2.59□□□□□ -2
NUP54-208ENST00000508604 ZNF300Q96RE9 604 aaPredicted RBP2.59□□□□□ -2
NUP54-208ENST00000508604 PCYT2Q99447 389 aa2.59□□□□□ -2
NUP54-208ENST00000508604 ZBTB20Q9HC78 741 aaPredicted RBP2.59□□□□□ -2
NUP54-208ENST00000508604 TCP11L1Q9NUJ3 509 aa2.59□□□□□ -2
NUP54-208ENST00000508604 SMCHD1A6NHR9 2005 aa2.58□□□□□ -2
NUP54-208ENST00000508604 TEX22C9J3V5 150 aa2.58□□□□□ -2
NUP54-208ENST00000508604 SRSF10O75494 262 aaKnown RBP2.58□□□□□ -2
NUP54-208ENST00000508604 PDE9AO76083 593 aa2.58□□□□□ -2
NUP54-208ENST00000508604 PARNO95453 639 aaKnown RBP2.58□□□□□ -2
NUP54-208ENST00000508604 DNAH10OSP0CZ25 163 aa2.58□□□□□ -2
NUP54-208ENST00000508604 RUNX1T1Q06455 604 aa2.58□□□□□ -2
NUP54-208ENST00000508604 TUBB8Q3ZCM7 444 aa2.58□□□□□ -2
NUP54-208ENST00000508604 SYCP2LQ5T4T6 812 aa2.58□□□□□ -2
NUP54-208ENST00000508604 MAP7D3Q8IWC1 876 aa2.58□□□□□ -2
NUP54-208ENST00000508604 GRHL3Q8TE85 626 aa2.58□□□□□ -2
NUP54-208ENST00000508604 EYA3Q99504 573 aa2.58□□□□□ -2
NUP54-208ENST00000508604 LRMDAQ9H2I8 198 aa2.58□□□□□ -2
NUP54-208ENST00000508604 TAOK3Q9H2K8 898 aa2.58□□□□□ -2
NUP54-208ENST00000508604 RASSF1Q9NS23 344 aa2.58□□□□□ -2
NUP54-208ENST00000508604 GRHPRQ9UBQ7 328 aa2.58□□□□□ -2
NUP54-208ENST00000508604 ACAD8Q9UKU7 415 aa2.58□□□□□ -2
NUP54-208ENST00000508604 KCNJ14Q9UNX9 436 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms