RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TRMT1Q9NXH9 659 aaKnown RBP4.69□□□□□ -1.66
VPS13A-212ENST00000493341 HEY2Q9UBP5 337 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 UTS2RQ9UKP6 389 aa4.69□□□□□ -1.66
VPS13A-212ENST00000493341 POC1B-GALNT4F8VUJ3 575 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 RHODO00212 210 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ICAM1P05362 532 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 LCKP06239 509 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 MMP2P08253 660 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SRCP12931 536 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 GAP43P17677 238 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PTPN3P26045 913 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 MPLP40238 635 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ZNF131P52739 623 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 YBEYP58557 167 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 RRS1Q15050 365 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 FAM98BQ52LJ0 330 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SFMBT2Q5VUG0 894 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PQLC2Q6ZP29 291 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 RHOUQ7L0Q8 258 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 DSG4Q86SJ6 1040 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 CEP57Q86XR8 500 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 UTP15Q8TED0 518 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SPACA9Q96E40 222 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 BBC3Q96PG8 261 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 MLPHQ9BV36 600 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ANKZF1Q9H8Y5 726 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 MOV10Q9HCE1 1003 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 CHMP1AQ9HD42 196 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 IL1RAPL2Q9NP60 686 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SLC24A2Q9UI40 661 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 LAMP3Q9UQV4 416 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 WIPF3A6NGB9 483 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 FOXO6A8MYZ6 492 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 KDM4EB2RXH2 506 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 HSPB6O14558 160 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 CLIC2O15247 247 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 JTBO76095 146 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 KCNK5O95279 499 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PNPP00491 289 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ITGB3P05106 788 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 FAM58BPP0C7Q3 252 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 TFEBP19484 476 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 CFPP27918 469 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SLC16A2P36021 539 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 KCNJ1P48048 391 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ITGA7Q13683 1181 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PKP1Q13835 747 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PTPAQ15257 358 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 CCDC158Q5M9N0 1113 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ENTPD8Q5MY95 495 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 MEX3CQ5U5Q3 659 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 MOXD1Q6UVY6 613 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ZBTB49Q6ZSB9 765 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ZNF595Q8IYB9 648 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 NHLRC2Q8NBF2 726 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SPATA20Q8TB22 786 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 TRPC4APQ8TEL6 797 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 WIPF2Q8TF74 440 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 LENG9Q96B70 501 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ERO1AQ96HE7 468 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 SLC5A7Q9GZV3 580 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PPIL3Q9H2H8 161 aaKnown RBP4.68□□□□□ -1.66
VPS13A-212ENST00000493341 AAMDCQ9H7C9 122 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 CYP4F11Q9HBI6 524 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 PDRG1Q9NUG6 133 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 OR14J1Q9UGF5 321 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 IL17BQ9UHF5 180 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 TSPYL4Q9UJ04 414 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 WNT6Q9Y6F9 365 aa4.68□□□□□ -1.66
VPS13A-212ENST00000493341 ZBTB14O43829 449 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 UGDHO60701 494 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 STAM2O75886 525 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 RNF8O76064 485 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SIX3O95343 332 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 GCNT3O95395 438 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TOP3BO95985 862 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 GH2P01242 217 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CBSLP0DN79 551 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PCP11498 1178 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 DESP17661 470 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CBSP35520 551 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CD86P42081 329 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ADORA2A-AS1P86434 159 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TAZQ16635 292 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SMN1Q16637 294 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ATP13A5Q4VNC0 1218 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PLA2G4FQ68DD2 849 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SIGIRRQ6IA17 410 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 INTS8Q75QN2 995 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 MRGPREQ86SM8 312 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 FAM217AQ8IXS0 508 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PEX5LQ8IYB4 626 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 AFAP1Q8N556 730 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SLC25A41Q8N5S1 370 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TEX9Q8N6V9 391 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 LILRB1Q8NHL6 650 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TAS1R2Q8TE23 839 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 REPS1Q96D71 796 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms