RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TMEM68Q96MH6 324 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 POLR3GLQ9BT43 218 aa5.92□□□□□ -1.46
USP40-213ENST00000483216 FBRSL1Q9HCM7 1045 aaKnown RBP5.92□□□□□ -1.46
USP40-213ENST00000483216 NAIPQ13075 1403 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 CNTLNQ9NXG0 1405 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 NUP153P49790 1475 aaKnown RBP5.91□□□□□ -1.46
USP40-213ENST00000483216 TBX18O95935 607 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 CD4P01730 458 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 CLCNKAP51800 687 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 ERVFC1-1P60608 527 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 POU3F1Q03052 451 aaPredicted RBP5.91□□□□□ -1.46
USP40-213ENST00000483216 DSTYKQ6XUX3 929 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 TMEM116Q8NCL8 245 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 SMRP1Q8NCR6 262 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 TDRD7Q8NHU6 1098 aaKnown RBP5.91□□□□□ -1.46
USP40-213ENST00000483216 ANP32BQ92688 251 aaKnown RBP5.91□□□□□ -1.46
USP40-213ENST00000483216 PPP1R13BQ96KQ4 1090 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 SHROOM2Q13796 1616 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 PTPRGP23470 1445 aa5.91□□□□□ -1.46
USP40-213ENST00000483216 A0A1W2PQF6 199 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 PRR23D1E9PI22 279 aaPredicted RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 MBD4O95243 580 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 CCNDBP1O95273 360 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 TPM2P07951 284 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 PRR23D2P0DMB1 279 aaPredicted RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 KRT10P13645 584 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 PAX3P23760 479 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 TNNT2P45379 298 aaPredicted RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 ILF3Q12906 894 aaKnown RBP eCLIP5.9□□□□□ -1.46
USP40-213ENST00000483216 CSTF3Q12996 717 aaKnown RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 FRG1Q14331 258 aaKnown RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 SIGIRRQ6IA17 410 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 WBP2NLQ6ICG8 309 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 KCNG4Q8TDN1 519 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 EVI5LQ96CN4 794 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 PERPQ96FX8 193 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 HARBI1Q96MB7 349 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 IL17FQ96PD4 163 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 PNNQ9H307 717 aaKnown RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 EBF2Q9HAK2 575 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 UPF2Q9HAU5 1272 aaKnown RBP5.9□□□□□ -1.46
USP40-213ENST00000483216 LTB4R2Q9NPC1 389 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 VDAC3Q9Y277 283 aa5.9□□□□□ -1.46
USP40-213ENST00000483216 CENPJQ9HC77 1338 aaPredicted RBP5.9□□□□□ -1.47
USP40-213ENST00000483216 CCDC144AA2RUR9 1427 aa5.9□□□□□ -1.47
USP40-213ENST00000483216 HNRNPCL2B2RXH8 293 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 VCYO14598 125 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 CLGNO14967 610 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 BDKRB2P30411 391 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 TERF1P54274 439 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 RPS3AP61247 264 aaKnown RBP5.89□□□□□ -1.47
USP40-213ENST00000483216 UNQ6126/PRO20091Q6UXV3 157 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 DPPA4Q7L190 304 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 CACNA2D4Q7Z3S7 1137 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 CPLX4Q7Z7G2 160 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 FIG4Q92562 907 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 IGSF8Q969P0 613 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 TRIM44Q96DX7 344 aaPredicted RBP5.89□□□□□ -1.47
USP40-213ENST00000483216 TMEM19Q96HH6 336 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 ACOX2Q99424 681 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 RETREG1Q9H6L5 497 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 LIMA1Q9UHB6 759 aaKnown RBP5.89□□□□□ -1.47
USP40-213ENST00000483216 KCNE2Q9Y6J6 123 aa5.89□□□□□ -1.47
USP40-213ENST00000483216 TROQ12816 1431 aaPredicted RBP5.89□□□□□ -1.47
USP40-213ENST00000483216 ADCY10Q96PN6 1610 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 IGHV4OR15-8A0A075B7B6 117 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 ZNF587BE7ETH6 402 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 TULP2O00295 520 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 IL7RP16871 459 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 HOXC9P31274 260 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 MAN1A1P33908 653 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 PBX3P40426 434 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 FASLGP48023 281 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 CSNK2A1P68400 391 aaPredicted RBP5.88□□□□□ -1.47
USP40-213ENST00000483216 GRIK2Q13002 908 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 RALBP1Q15311 655 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 FRG2Q64ET8 278 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 RGMBQ6NW40 437 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 TUBA1AQ71U36 451 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 SATL1Q86VE3 508 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 CCDC13Q8IYE1 715 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 NAGSQ8N159 534 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 NGEFQ8N5V2 710 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 TEX19Q8NA77 164 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 CSNK2A3Q8NEV1 391 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 SORCS1Q8WY21 1168 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 LMLNQ96KR4 655 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 NAP1L4Q99733 375 aaKnown RBP5.88□□□□□ -1.47
USP40-213ENST00000483216 TUBA1CQ9BQE3 449 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 PCGF1Q9BSM1 259 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 UBTD1Q9HAC8 227 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 PLSCR4Q9NRQ2 329 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 CNOT8Q9UFF9 292 aaKnown RBP5.88□□□□□ -1.47
USP40-213ENST00000483216 KCNG2Q9UJ96 466 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 DNMT1P26358 1616 aaKnown RBP5.88□□□□□ -1.47
USP40-213ENST00000483216 ITSN2Q9NZM3 1697 aa5.88□□□□□ -1.47
USP40-213ENST00000483216 A0A087X0M5 115 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 A0A0G2JPF8 293 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 A0A1B0GX30 115 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 HNRNPCL3B7ZW38 293 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms