RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ECEL1O95672 775 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 EML2O95834 649 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 TNNT1P13805 278 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 HGFP14210 728 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 CCKBRP32239 447 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 SLC1A1P43005 524 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 SPINT3P49223 89 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 DYNLT1P63172 113 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 AP1B1Q10567 949 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 GALNT3Q14435 633 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 NR1D2Q14995 579 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 PRKD1Q15139 912 aaPredicted RBP14.02□□□□□ -0.16
UPF3A-204ENST00000475218 PYCR3Q53H96 274 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 SLC30A9Q6PML9 568 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 PCSK4Q6UW60 755 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 LYSMD3Q7Z3D4 306 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 RFX6Q8HWS3 928 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 SLITRK4Q8IW52 837 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 NRSN1Q8IZ57 195 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 ARL14Q8N4G2 192 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 SPATA22Q8NHS9 363 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 ZDHHC1Q8WTX9 485 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 AGAP3Q96P47 875 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 THSD1Q9NS62 852 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 ALG6Q9Y672 507 aa14.02□□□□□ -0.16
UPF3A-204ENST00000475218 C1orf232A0A0U1RR37 186 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 RCCD1A6NED2 376 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 DNAJC6O75061 913 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 TNFSF15O95150 251 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 ATP1A1P05023 1023 aaKnown RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 PIRTP0C851 137 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 INHBCP55103 352 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 ILF3Q12906 894 aaKnown RBP eCLIP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 PDK1Q15118 436 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 FOXR1Q6PIV2 292 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 MARK2Q7KZI7 788 aaKnown RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 NDUFAF2Q8N183 169 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 FCRL3Q96P31 734 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 OR2M4Q96R27 311 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 GSDMCQ9BYG8 508 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 EPB41L5Q9HCM4 733 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 BAHCC1Q9P281 2608 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 FASNP49327 2511 aaKnown RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 MT-CYBP00156 380 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 PTPN3P26045 913 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 CD68P34810 354 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 UGT1A5P35504 534 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 OR1D5P58170 312 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 CFHR1Q03591 330 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 WASHC5Q12768 1159 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 COL9A2Q14055 689 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 SPOCD1Q6ZMY3 1216 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 ZNF574Q6ZN55 896 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 KDELC2Q7Z4H8 507 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 RAVER1Q8IY67 606 aaKnown RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 EXD1Q8NHP7 514 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 ZNF830Q96NB3 372 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 MLPHQ9BV36 600 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 SLC25A51Q9H1U9 297 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 SEMA6CQ9H3T2 930 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 CPNE5Q9HCH3 593 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 DDX56Q9NY93 547 aaKnown RBP14.01□□□□□ -0.17
UPF3A-204ENST00000475218 PRKAB1Q9Y478 270 aa14.01□□□□□ -0.17
UPF3A-204ENST00000475218 PLD2O14939 933 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 PPM1DO15297 605 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 ITGA2BP08514 1039 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 ETV5P41161 510 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 MAGEA1P43355 309 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 RAB11FIP2Q7L804 512 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 KIAA1524Q8TCG1 905 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 KRT35Q92764 455 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 NUDT22Q9BRQ3 303 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 HERPUD2Q9BSE4 406 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 TRIM5Q9C035 493 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 RBSNQ9H1K0 784 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 RDH14Q9HBH5 336 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 GLOD4Q9HC38 313 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 SEPT10Q9P0V9 454 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 DNPEPQ9ULA0 475 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 REXO2Q9Y3B8 237 aaKnown RBP14□□□□□ -0.17
UPF3A-204ENST00000475218 PCDHA13Q9Y5I0 950 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 SPO11Q9Y5K1 396 aa14□□□□□ -0.17
UPF3A-204ENST00000475218 AURKAO14965 403 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 PPP1R12AO14974 1030 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 KLK10O43240 276 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 PSTPIP1O43586 416 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 SPOPO43791 374 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CST8O60676 142 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ZFXP17010 805 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ITIH1P19827 911 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CA4P22748 312 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 FECHP22830 423 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CD1CP29017 333 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 RBMS1P29558 406 aaKnown RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ACTR1BP42025 376 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ACTR1AP61163 376 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CLN3Q13286 438 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 TEX44Q53QW1 395 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 TMC3Q7Z5M5 1100 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms