RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CEP76Q8TAP6 659 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 REXO5Q96IC2 774 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 FNDC11Q9BVV2 318 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 EVA1AQ9H8M9 152 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 PPP2R3BQ9Y5P8 575 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CDH10Q9Y6N8 788 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CCDC88AQ3V6T2 1871 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 RSL1D1O76021 490 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 UBE2SQ16763 222 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 GOLGA7BQ2TAP0 167 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SYT12Q8IV01 421 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 KBTBD7Q8WVZ9 684 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SLC30A2Q9BRI3 323 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 COMMD4Q9H0A8 199 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CCSER2Q9H7U1 834 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 TLR8Q9NR97 1041 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 KCNN3Q9UGI6 736 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ZNF639Q9UID6 485 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ELOVL7A1L3X0 281 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ENO2P09104 434 aaPredicted RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 ADORA2BP29275 332 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 HSD17B2P37059 387 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 EEFSECP57772 596 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 SEC23AQ15436 765 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ZNF470Q6ECI4 717 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SWSAP1Q6NVH7 229 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 USP17L6PQ6QN14 398 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ZNF571Q7Z3V5 609 aaPredicted RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 RANBP3LQ86VV4 465 aaPredicted RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 SGCDQ92629 289 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SLC41A3Q96GZ6 507 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 COLEC11Q9BWP8 271 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 LHX5Q9H2C1 402 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 GDAP2Q9NXN4 497 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 JCADQ9P266 1359 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 GRXCR2A6NFK2 248 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 B8ZZF3 427 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 MCIDASD6RGH6 385 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ATRNO75882 1429 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 IFNW1P05000 195 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 NCF1P14598 390 aaPredicted RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 CRKLP46109 303 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 LRRN1Q6UXK5 716 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SLC47A1Q96FL8 570 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 PRICKLE1Q96MT3 831 aaPredicted RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 PBDC1Q9BVG4 233 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 APOL5Q9BWW9 433 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 MTFR1LQ9H019 292 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ARHGEF4Q9NR80 690 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 C2orf71A6NGG8 1288 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 EFCAB9A8MZ26 197 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SULT1C2O00338 296 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CBX6O95503 412 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CSN2P05814 226 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 BPGMP07738 259 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 UROSP10746 265 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 FOXR1Q6PIV2 292 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 FAM20CQ8IXL6 584 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 RBM15BQ8NDT2 890 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 SMG7Q92540 1137 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 KLHL5Q96PQ7 755 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 RIOK2Q9BVS4 552 aaKnown RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS53-204ENST00000437048 CPVLQ9H3G5 476 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 DPAGT1Q9H3H5 408 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CHMP1AQ9HD42 196 aaPredicted RBP7.17□□□□□ -1.26
VPS53-204ENST00000437048 TSTD3H0UI37 97 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 IFNA1P01562 189 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 MT-ND2P03891 347 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CPB1P15086 417 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 NRF1Q16656 503 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 HLA-DQA1Q5Y7H0 255 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 RTL4Q6ZR62 310 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CAMKK1Q8N5S9 505 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 SERAC1Q96JX3 654 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 C8orf48Q96LL4 319 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 NSMCE3Q96MG7 304 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 CCDC115Q96NT0 180 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 DERAQ9Y315 318 aa7.17□□□□□ -1.26
VPS53-204ENST00000437048 ERVK-10P10266 1014 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CTSKP43235 329 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 GAS6Q14393 721 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ASTE1Q2TB18 679 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 LDHDQ86WU2 507 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 RELL1Q8IUW5 271 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 B3GALNT2Q8NCR0 500 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ASB13Q8WXK3 278 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ZBED3Q96IU2 234 aaPredicted RBP7.16□□□□□ -1.26
VPS53-204ENST00000437048 KCNH4Q9UQ05 1017 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 COX7A2P14406 83 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 PERM1Q5SV97 790 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 C3P1Q6ZMU1 363 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 GON7Q9BXV9 100 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ALG2Q9H553 416 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ACSL5Q9ULC5 683 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 POFUT2Q9Y2G5 429 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 IGSF6O95976 241 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 CYB5AP00167 134 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 ICAM1P05362 532 aa7.16□□□□□ -1.26
VPS53-204ENST00000437048 MRPS10P82664 201 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms