RNA–Protein interactions for RNA: ENST00000403495.2

HMGB1P17-201, Transcript of high mobility group box 1 pseudogene 17, humanhuman

BASIC

Gene HMGB1P17, Length 628 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P17-201ENST00000403495 MPLKIPQ8TAP9 179 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 PRPF31Q8WWY3 499 aaKnown RBP3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 ADAMTS14Q8WXS8 1223 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 APBB2Q92870 758 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 SECISBP2LQ93073 1101 aaKnown RBP3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 ORAI1Q96D31 301 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 HARBI1Q96MB7 349 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 ZNF778Q96MU6 729 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 TEX12Q9BXU0 123 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 SPRY4Q9C004 299 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 ANKRD2Q9GZV1 360 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 DNAJC18Q9H819 358 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 POT1Q9NUX5 634 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 TAB2Q9NYJ8 693 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 OR14J1Q9UGF5 321 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 TTC7AQ9ULT0 858 aaPredicted RBP3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 B3GALT5Q9Y2C3 310 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 TRPV2Q9Y5S1 764 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 SQORQ9Y6N5 450 aa3.91□□□□□ -1.78
HMGB1P17-201ENST00000403495 hCG_1809904A0A1W2PP81 198 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 A0A1W2PPE2 198 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 A0A1W2PR64 198 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 M0QZ24 198 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 UBE2CO00762 179 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 SOCS6O14544 535 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 PPFIA2O75334 1257 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 PRCPP42785 496 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 GPR143P51810 404 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 NUDT6P53370 316 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 MRPS34P82930 218 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 TFAP4Q01664 338 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 CALD1Q05682 793 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 DDR1Q08345 913 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 SPOCK1Q08629 439 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 PRPF4BQ13523 1007 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 TNFAIP1Q13829 316 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 KRT24Q2M2I5 525 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 SOWAHCQ53LP3 525 aaPredicted RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 COLEC12Q5KU26 742 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 SPECC1Q5M775 1068 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 DNTTIP2Q5QJE6 756 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 ADALQ6DHV7 355 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 ZNF425Q6IV72 752 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 METTL2BQ6P1Q9 378 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 WDR73Q6P4I2 378 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 FAM47EQ6ZV65 393 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 MRPL10Q7Z7H8 261 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 PRPF39Q86UA1 669 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 TSPAN33Q86UF1 283 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 CCDC190Q86UF4 302 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 HM13Q8TCT9 377 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 TMCO6Q96DC7 493 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 METTL2AQ96IZ6 378 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 CEP295NLQ96MC4 621 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 CDRT15Q96T59 188 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 CMKLR1Q99788 373 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 KXD1Q9BQD3 176 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 SLC29A3Q9BZD2 475 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 RBM38Q9H0Z9 239 aaKnown RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 CCDC177Q9NQR7 707 aaPredicted RBP3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 GIMAP4Q9NUV9 329 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 PADI3Q9ULW8 664 aa3.9□□□□□ -1.79
HMGB1P17-201ENST00000403495 LOC102723996A0A087X1L8 192 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 IGHV4-28A0A0C4DH34 117 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 LNP1A1A4G5 178 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 CPED1A4D0V7 1026 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 LINC01553A4QN01 128 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 LRRC72A6NJI9 287 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 GLOD5A6NK44 160 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 VWA5AO00534 786 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 SOCS2O14508 198 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 SPRY3O43610 288 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 AVILO75366 819 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 RSL1D1O76021 490 aaKnown RBP3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 SOX30O94993 753 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 CH25HO95992 272 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 APOA4P06727 396 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 GPTP24298 496 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 DNASE1P24855 282 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 C21orf33P30042 268 aaPredicted RBP3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 BDKRB2P30411 391 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 HOXA13P31271 388 aaPredicted RBP3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 PNLIPRP2P54317 469 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 MRPS21P82921 87 aaKnown RBP3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 ST3GAL1Q11201 340 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 SREBF2Q12772 1141 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 AIMP1Q12904 312 aaKnown RBP3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 GRAPQ13588 217 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 DPY19L2P1Q6NXN4 242 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 PIM3Q86V86 326 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 RASGEF1CQ8N431 466 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 PCDH20Q8N6Y1 951 aaKnown RBP3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 PRR26Q8N8Z3 221 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 AVL9Q8NBF6 648 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 ACVR1CQ8NER5 493 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 OR1J2Q8NGS2 313 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 GSDMBQ8TAX9 411 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 ZFAND2BQ8WV99 257 aa3.89□□□□□ -1.79
HMGB1P17-201ENST00000403495 CNDP2Q96KP4 475 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms