RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 ALDH3A2P51648 485 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 LSM3P62310 102 aaKnown RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 TFAMQ00059 246 aaKnown RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 DPYSL2Q16555 572 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 MEP1AQ16819 746 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 CEP78Q5JTW2 689 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 STEAP3Q658P3 488 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 NCBP2-AS2Q69YL0 99 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 SMYD5Q6GMV2 418 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 DESI1Q6ICB0 168 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 FKBP9P1Q75LS8 142 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 PAGE2Q7Z2X7 111 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 KCNMB4Q86W47 210 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 ZC3HC1Q86WB0 502 aaKnown RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 OSCP1Q8WVF1 389 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 GLMNQ92990 594 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 CSPG4P5Q96PW8 444 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 NIFKQ9BYG3 293 aaKnown RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 NTN4Q9HB63 628 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 FBRSL1Q9HCM7 1045 aaKnown RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 SATB2Q9UPW6 733 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 NAALAD2Q9Y3Q0 740 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 SNX5Q9Y5X3 404 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 AP3B1O00203 1094 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 CHRNA1P02708 482 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 ALPLP05186 524 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 FYNP06241 537 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 EDNRBP24530 442 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 ARL1P40616 181 aaPredicted RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 SEPHS1P49903 392 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 CLCN3P51790 818 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 CLCNKBP51801 687 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 DNAJB13P59910 316 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 VBP1P61758 197 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 METTL7BQ6UX53 244 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 STRADAQ7RTN6 431 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 C2orf69Q8N8R5 385 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 PPP1R13LQ8WUF5 828 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 FIG4Q92562 907 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 NXNL1Q96CM4 212 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 P2RY11Q96G91 374 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 SPATA33Q96N06 139 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 BDH2Q9BUT1 245 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 SLIRPQ9GZT3 109 aaKnown RBP14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 POMKQ9H5K3 350 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 ACOT9Q9Y305 439 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 NDUFAF1Q9Y375 327 aa14.62□□□□□ -0.07
VPS9D1-201ENST00000389386 CCRL2O00421 344 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 USP12O75317 370 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 UMPSP11172 480 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CYP3A5P20815 502 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 DNAJB1P25685 340 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 LAMTOR4Q0VGL1 99 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 DAG1Q14118 895 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 FXNQ16595 210 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 ZNF181Q2M3W8 571 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CTU2Q2VPK5 515 aaKnown RBP14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 LAIR2Q6ISS4 152 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CYHR1Q6ZMK1 362 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 LARP4Q71RC2 724 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 SPATA6LQ8N4H0 392 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 BEST2Q8NFU1 509 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 ANGPTL6Q8NI99 470 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 NODALQ96S42 347 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 BCO2Q9BYV7 579 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 SNTG2Q9NY99 539 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 IL37Q9NZH6 218 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 VANGL2Q9ULK5 521 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 BRCA2P51587 3418 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CCL15-CCL14A0A0B4J2E2 113 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 UPK1AO00322 258 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 NR5A2O00482 541 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 TCF3P15923 654 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 PRKACBP22694 351 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 ACVR2AP27037 513 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 SDC4P31431 198 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 FPGSQ05932 587 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CCL15Q16663 113 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 VPS26BQ4G0F5 336 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 NT5DC4Q86YG4 428 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 TMEM192Q8IY95 271 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 BEND7Q8N7W2 519 aaPredicted RBP14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 FAR1Q8WVX9 515 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 RASSF5Q8WWW0 418 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 GPR20Q99678 358 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CHID1Q9BWS9 393 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 CLPBQ9H078 707 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 PCDHA9Q9Y5H5 950 aa14.61□□□□□ -0.07
VPS9D1-201ENST00000389386 A0A0J9YYE9 177 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 NEMP2A6NFY4 417 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 INO80B-WBP1J3KQ70 363 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 MAN1A2O60476 641 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 PTTG1O95997 202 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 MT-CO1P00395 513 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 PGK1P00558 417 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 KRT19P08727 400 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 NCK1P16333 377 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 IFNA8P32881 189 aa14.6□□□□□ -0.07
VPS9D1-201ENST00000389386 HUNKP57058 714 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms