RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CARS2Q9HA77 564 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 HMX1Q9NP08 348 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TREM1Q9NP99 234 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 POLR3BQ9NW08 1133 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GSKIPQ9P0R6 139 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 HACL1Q9UJ83 578 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C17orf102A2RUQ5 167 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 H0YJX3 145 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 H3BNX3 289 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FFAR2O15552 330 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GGPS1O95749 300 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 A1BGP04217 495 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CCNE1P24864 410 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DLSTP36957 453 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 POLR2LP62875 67 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C2orf80Q0P641 193 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TBCELQ5QJ74 424 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PDPK2PQ6A1A2 396 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC8B1Q6J4K2 584 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PDZD9Q8IXQ8 264 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM192Q8IY95 271 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 XKR8Q9H6D3 395 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PDGFCQ9NRA1 345 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GTF3C1Q12789 2109 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 AFF2P51816 1311 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SYNGR4O95473 234 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PENKP01210 267 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GRIA1P42261 906 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PIK3CGP48736 1102 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GBX2P52951 348 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MAP4K2Q12851 820 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FRG1Q14331 258 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PKDCCQ504Y2 493 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 USP17L2Q6R6M4 530 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ILDR2Q71H61 639 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KCNK18Q7Z418 384 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ANKRD23Q86SG2 305 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CROCCP3Q8IVE0 287 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 NLGN4XQ8N0W4 816 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DEFB119Q8N690 84 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MCPH1Q8NEM0 835 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 RHEBL1Q8TAI7 183 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C1orf54Q8WWF1 131 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FRZBQ92765 325 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KCNN1Q92952 543 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TATDN2Q93075 761 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FAM122AQ96E09 287 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FAIM2Q9BWQ8 316 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TTYH1Q9H313 450 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DCLRE1BQ9H816 532 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CNTD2Q9H8S5 307 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 RC3H2Q9HBD1 1191 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SPON1Q9HCB6 807 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC52A1Q9NWF4 448 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TLR7Q9NYK1 1049 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KLHL42Q9P2K6 505 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZMAT5Q9UDW3 170 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ITGB1BP2Q9UKP3 347 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC22A14Q9Y267 594 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PADI2Q9Y2J8 665 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PCDHGA10Q9Y5H3 936 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF638Q14966 1978 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CARMIL3Q8ND23 1372 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 LOC102724200A0A096LPH7 203 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 OR2M5A3KFT3 312 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MT-CO1P00395 513 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SERPINA4P29622 427 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KCNMA1Q12791 1236 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FAM35AQ86V20 835 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PHYKPLQ8IUZ5 450 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CMIPQ8IY22 773 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF101Q8IZC7 436 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PROM2Q8N271 834 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PRR18Q8N4B5 295 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KIF2BQ8N4N8 673 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 UBA3Q8TBC4 463 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF564Q8TBZ8 553 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TBCKQ8TEA7 893 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C2orf49Q9BVC5 232 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM260Q9NX78 707 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KCNK4Q9NYG8 393 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 STOX2Q9P2F5 926 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DKKL1Q9UK85 242 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SCN1AP35498 2009 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ATXN2Q99700 1313 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DVL1O14640 695 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KCNQ2O43526 872 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 NPTXRO95502 500 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TGM6O95932 706 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GH2P01242 217 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 JUNP05412 331 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZBTB48P10074 688 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 HOXB9P17482 250 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CDH3P22223 829 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DVL1P1P54792 670 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ACTR1AP61163 376 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 HERV-K104P61576 105 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC13A2Q13183 592 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GRIN2CQ14957 1233 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KYAT1Q16773 422 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms