RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 Q3C1V9 767 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 PLPPR4Q7Z2D5 763 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 HIST1H2AHQ96KK5 128 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 HIST1H2AJQ99878 128 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 SSX3Q99909 188 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 H2AFJQ9BTM1 129 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 ZNF717Q9BY31 904 aaPredicted RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 CCDC86Q9H6F5 360 aaKnown RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 SP110Q9HB58 689 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 ELL3Q9HB65 397 aaPredicted RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 POPDC3Q9HBV1 291 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 PREBQ9HCU5 417 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 FAM105AQ9NUU6 356 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 TRPM5Q9NZQ8 1165 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 TBC1D14Q9P2M4 693 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 COL1A2P08123 1366 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 CCDC154A6NI56 674 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 B3GALNT1O75752 331 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 AMPD1P23109 780 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 IDH3AP50213 366 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 CACNB3P54284 484 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 RAB25P57735 213 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 ATP6V0D1P61421 351 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 SLC25A3Q00325 362 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 PLEKHG4Q58EX7 1191 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 GLRA4Q5JXX5 417 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 XKRXQ6PP77 449 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 DEF8Q6ZN54 512 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 SCN4BQ8IWT1 228 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 OR52K2Q8NGK3 314 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 NRG4Q8WWG1 115 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 SMG7Q92540 1137 aaKnown RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 AKAP1Q92667 903 aaKnown RBP eCLIP6.4□□□□□ -1.39
VPS35-201ENST00000299138 MED28Q9H204 178 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 DDX4Q9NQI0 724 aaKnown RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 PXMP2Q9NR77 195 aa6.4□□□□□ -1.39
VPS35-201ENST00000299138 SMPD3Q9NY59 655 aaPredicted RBP6.4□□□□□ -1.39
VPS35-201ENST00000299138 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.4□□□□□ -1.39
VPS35-201ENST00000299138 ADAMTS3O15072 1205 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 NDUFS2O75306 463 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CILPO75339 1184 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 LHCGRP22888 699 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 INHBCP55103 352 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 MLLT6P55198 1093 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 RPL10AP62906 217 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 RPL19P84098 196 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 ILF3Q12906 894 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS35-201ENST00000299138 ACOX1Q15067 660 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SSX2Q16385 188 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 FAM187BQ17R55 369 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 AADACL2Q6P093 401 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 LRRC69Q6ZNQ3 347 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PID1Q7Z2X4 250 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CRELD1Q96HD1 420 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 EMILIN2Q9BXX0 1053 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 USP29Q9HBJ7 922 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ABCB9Q9NP78 766 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PDLIM7Q9NR12 457 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 TBC1D13Q9NVG8 400 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ARMCX1Q9P291 453 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PPM1HQ9ULR3 514 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 MYH8P13535 1937 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CENPBD1B2RD01 187 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 H3BNH8 94 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SSX4O60224 188 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 STX11O75558 287 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 VAPBO95292 243 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 VNN2O95498 520 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CNPP09543 421 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 AXLP30530 894 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CNTN1Q12860 1018 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ABRQ12979 859 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PCID2Q5JVF3 399 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 DACT2Q5SW24 774 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 GALNTL5Q7Z4T8 443 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 HDDC3Q8N4P3 179 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 MAGEE2Q8TD90 523 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 SLC4A5Q9BY07 1137 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 CXorf21Q9HAI6 301 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 C3orf18Q9UK00 162 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RIMKLBQ9ULI2 386 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 UBQLN1Q9UMX0 589 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 LTBP4Q8N2S1 1624 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 EME2A4GXA9 379 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 INPP4BO15327 924 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RNASEH1O60930 286 aaKnown RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 SLC25A27O95847 323 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 NUDT7P0C024 238 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 FGF3P11487 239 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 PTX3P26022 381 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 RGS6P49758 472 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ZMYND11Q15326 602 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 GARNL3Q5VVW2 1013 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 SPATA19Q7Z5L4 167 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 DNAJB7Q7Z6W7 309 aaPredicted RBP6.39□□□□□ -1.39
VPS35-201ENST00000299138 FOXRED2Q8IWF2 684 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 PYDC1Q8WXC3 89 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 RXFP2Q8WXD0 754 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 WRNIP1Q96S55 665 aa6.39□□□□□ -1.39
VPS35-201ENST00000299138 ATXN3LQ9H3M9 355 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms