RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OVOS1Q6IE37 1185 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 RDH11Q8TC12 318 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CYGBQ8WWM9 190 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 BHMTQ93088 406 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 WBP2Q969T9 261 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 C12orf43Q96C57 262 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 FBXL8Q96CD0 374 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ATOH8Q96SQ7 321 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 VCX3BQ9H321 246 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 EPB41L1Q9H4G0 881 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ARMC7Q9H6L4 198 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TRMT13Q9NUP7 481 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 VTI1BQ9UEU0 232 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CDH9Q9ULB4 789 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 INVSQ9Y283 1065 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 IMPDH1P20839 514 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 MTPNP58546 118 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 POU4F1Q01851 419 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 TMED1Q13445 227 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 FRG1Q14331 258 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 FSCN1Q16658 493 aaKnown RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 NADSYN1Q6IA69 706 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 OGFOD2Q6N063 350 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 PSAPL1Q6NUJ1 521 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 OR7D4Q8NG98 312 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 MAGEE2Q8TD90 523 aaPredicted RBP10.66□□□□□ -0.7
USP28-201ENST00000003302 TSNARE1Q96NA8 513 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 ZIC5Q96T25 663 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CCSER2Q9H7U1 834 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 SLC6A13Q9NSD5 602 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 CLEC11AQ9Y240 323 aa10.66□□□□□ -0.7
USP28-201ENST00000003302 NT5C1B-RDH14C9J2C7 533 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 SLC7A1P30825 629 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 NRG1Q02297 640 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 NEDD8Q15843 81 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 GNASQ5JWF2 1037 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 POTEHQ6S545 545 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 LYSMD3Q7Z3D4 306 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 APLFQ8IW19 511 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 RHNO1Q9BSD3 238 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 VCX3AQ9NNX9 186 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 ZNF23P17027 643 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 HRH2P25021 359 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 AXLP30530 894 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 FPGSQ05932 587 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 GPR107Q5VW38 600 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 RTN4RL1Q86UN2 441 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 TMEM173Q86WV6 379 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 ABI1Q8IZP0 508 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 MDGA1Q8NFP4 955 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 RSPH1Q8WYR4 309 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 OSBPL11Q9BXB4 747 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 FAM124BQ9H5Z6 455 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 DMTF1Q9Y222 760 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 NPEPPSL1A6NEC2 478 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 C1RP00736 705 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 EEF1DP29692 281 aaKnown RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 SHMT2P34897 504 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 LHX1P48742 406 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 HERC3Q15034 1050 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 LRRC23Q53EV4 343 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 KRT80Q6KB66 452 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 ZFP1Q6P2D0 407 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 DNAJC14Q6Y2X3 702 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 PDZD4Q76G19 769 aaPredicted RBP10.65□□□□□ -0.7
USP28-201ENST00000003302 SYVN1Q86TM6 617 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 ISOC1Q96CN7 298 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 PPM1MQ96MI6 270 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 VAT1Q99536 393 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 ABCG8Q9H221 673 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 ACTL8Q9H568 366 aa10.65□□□□□ -0.7
USP28-201ENST00000003302 SUPT3HO75486 399 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 HOXC13P31276 330 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 PSMD8P48556 350 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 DNAJB13P59910 316 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 SQLEQ14534 574 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 LINC00523Q86TU6 105 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 EID2BQ96D98 161 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ADAM2Q99965 735 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 AGPAT4Q9NRZ5 378 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 PCDHGC4Q9Y5F7 938 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 UPK3BL1B0FP48 263 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 UPK3BL2E5RIL1 263 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 STRNO43815 780 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 MATN1P21941 496 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 THPOP40225 353 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 GSK3BP49841 420 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 HERVK_113P63132 956 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 BNIP3Q12983 259 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 SIDT2Q8NBJ9 832 aaKnown RBP10.64□□□□□ -0.71
USP28-201ENST00000003302 OR2T34Q8NGX1 318 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 OR2T3Q8NH03 318 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 LRRC58Q96CX6 371 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 CSF3RQ99062 836 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ADI1Q9BV57 179 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ERVK-6Q9BXR3 956 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 MYOFQ9NZM1 2061 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 DHRS12A0PJE2 317 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 ANXA9O76027 345 aa10.64□□□□□ -0.71
USP28-201ENST00000003302 APOA4P06727 396 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms