RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 WFS1O76024 890 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 KCNK10P57789 538 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FKBP3Q00688 224 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GRIK5Q16478 980 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GOLGA7BQ2TAP0 167 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FNDC3BQ53EP0 1204 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRG6Q86SQ4 1221 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SLC51AQ86UW1 340 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CMTR2Q8IYT2 770 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FEZF2Q8TBJ5 459 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TGFBRAP1Q8WUH2 860 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GTPBP3Q969Y2 492 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SNX24Q9Y343 169 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHGB7Q9Y5F8 929 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 DOCK4Q8N1I0 1966 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 C2orf71A6NGG8 1288 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ABLIM1O14639 778 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LRRN2O75325 713 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PGK1P00558 417 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PABPC4LP0CB38 370 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PFKLP17858 780 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PTPRAP18433 802 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SLC6A6P31641 620 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CCKBRP32239 447 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RFC2P35250 354 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LARS2Q15031 903 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM83EQ2M2I3 478 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF615Q8N8J6 731 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HJURPQ8NCD3 748 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LMX1AQ8TE12 382 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZDHHC15Q96MV8 337 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SDHAF2Q9NX18 166 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHGB2Q9Y5G2 931 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZFP37Q9Y6Q3 630 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF335Q9H4Z2 1342 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CPSF1Q10570 1443 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NCOA3Q9Y6Q9 1424 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MYOM2P54296 1465 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PI4KAP2A4QPH2 592 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RGSL1A5PLK6 1076 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MOXD2PA6NHM9 499 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CENPBD1B2RD01 187 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TGM5O43548 720 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SSX5O60225 188 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OR7A10O76100 309 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ATG7O95352 703 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TSPAN19P0C672 248 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM228BP0C875 321 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GIMD1P0DJR0 217 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RPL10P27635 214 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 DGKEP52429 567 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HERVK_113P62684 666 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RBP5P82980 135 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC14Q15048 493 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PDK3Q15120 406 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RHEBQ15382 184 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZER1Q7Z7L7 766 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CDKL3Q8IVW4 592 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GALNT15Q8N3T1 639 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LPCAT1Q8NF37 534 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OR6C4Q8NGE1 309 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 C15orf40Q8WUR7 153 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SYN2Q92777 582 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CAVIN3Q969G5 261 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ERMAPQ96PL5 475 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 BTBD9Q96Q07 612 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NOL11Q9H8H0 719 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NCOA5Q9HCD5 579 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FZD3Q9NPG1 666 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TAS2R16Q9NYV7 291 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TRPV2Q9Y5S1 764 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZMYM6O95789 1325 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF532Q9HCE3 1301 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MAST1Q9Y2H9 1570 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FASNP49327 2511 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 BORCS7-ASMTA0A0B4J1R7 106 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 WRBO00258 174 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NTRK1P04629 796 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LCP1P13796 627 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HOXB8P17481 243 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CD53P19397 219 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CAPGP40121 348 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MAGEA8P43361 318 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ROR1Q01973 937 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TAF5Q15542 800 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RFTN2Q52LD8 501 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SNRNP48Q6IEG0 339 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM171BQ6P995 826 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ESPNLQ6ZVH7 1005 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 C1orf186Q6ZWK4 172 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ATPAF2Q8N5M1 289 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OR7A2PQ8NGA2 310 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 BORCS7Q96B45 105 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MAF1Q9H063 256 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM49AQ9H0Q0 323 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM83DQ9H4H8 585 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 EPHX3Q9H6B9 360 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GPN1Q9HCN4 374 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PXMP2Q9NR77 195 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms