RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TMEM187Q14656 261 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 TAF11Q15544 211 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 TCTN1Q2MV58 587 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 KRTAP13-3Q3SY46 172 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 SGO1Q5FBB7 561 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 KRTAP5-2Q701N4 177 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 MYLK4Q86YV6 388 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF440Q8IYI8 595 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 TRIM58Q8NG06 486 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 OR52I2Q8NH67 350 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM222BQ8WU58 562 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 TAAR8Q969N4 342 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 LINGO1Q96FE5 620 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 PCYT2Q99447 389 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 SH3GL2Q99962 352 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 KCNN2Q9H2S1 579 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 PPP1R3EQ9H7J1 279 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 ERVMER34-1Q9H9K5 563 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 KIF17Q9P2E2 1029 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 PEMTQ9UBM1 199 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 POLG2Q9UHN1 485 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 FAM96BQ9Y3D0 163 aa2.72□□□□□ -1.97
SCN1A-208ENST00000625916 NOTCH2Q04721 2471 aa2.71□□□□□ -1.97
SCN1A-208ENST00000625916 ABHD14A-ACY1A0A1B0GW23 586 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 A0A1W2PNU3 283 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 CD48P09326 243 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 DPEP1P16444 411 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 SERPINB3P29508 390 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 HOXC8P31273 242 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 RPL24P83731 157 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 FAAP20Q6NZ36 180 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 METTL2BQ6P1Q9 378 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 FBXO46Q6PJ61 603 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 CPLX2Q6PUV4 134 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 RBMS3Q6XE24 437 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 TADA2BQ86TJ2 420 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 SLC35F3Q8IY50 421 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 SPATA6LQ8N4H0 392 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 ZBTB2Q8N680 514 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 METTL2AQ96IZ6 378 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 QRFPRQ96P65 431 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 PAGR1Q9BTK6 254 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 BICC1Q9H694 974 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 MMP25Q9NPA2 562 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 KIAA1456Q9P272 454 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 ACSL5Q9ULC5 683 aa2.71□□□□□ -1.98
SCN1A-208ENST00000625916 MRPS28Q9Y2Q9 187 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 LSM4Q9Y4Z0 139 aaKnown RBP2.71□□□□□ -1.98
SCN1A-208ENST00000625916 CTAGE9A4FU28 777 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 CLIC2O15247 247 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 KLK10O43240 276 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 PRC1O43663 620 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 MT-CYBP00156 380 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-208ENST00000625916 CTAGE8P0CG41 777 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 MAP2K2P36507 400 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 C2orf68Q2NKX9 166 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 TECRLQ5HYJ1 363 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 GGNBP1Q5YKI7 109 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 DUS1LQ6P1R4 473 aaKnown RBP2.7□□□□□ -1.98
SCN1A-208ENST00000625916 TOGARAM2Q6ZUX3 1019 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 ADGRG6Q86SQ4 1221 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 CTAGE4Q8IX94 777 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 SPPL3Q8TCT6 385 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 ZNF473Q8WTR7 871 aaKnown RBP2.7□□□□□ -1.98
SCN1A-208ENST00000625916 FCAMRQ8WWV6 532 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 STAMQ92783 540 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 POM121L2Q96KW2 1035 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 EYA3Q99504 573 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 VGLL1Q99990 258 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 PLEKHA4Q9H4M7 779 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 NOD2Q9HC29 1040 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 FGF22Q9HCT0 170 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 DAAM1Q9Y4D1 1078 aa2.7□□□□□ -1.98
SCN1A-208ENST00000625916 PTPRCP08575 1304 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 F5H423 210 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-208ENST00000625916 H7C423 109 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 CTSVO60911 334 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 FAM106CPP0CH98 169 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 KRT9P35527 623 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 KRTAP12-2P59991 146 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 MRPS5P82675 430 aaKnown RBP2.69□□□□□ -1.98
SCN1A-208ENST00000625916 FOXM1Q08050 763 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 PPP2R5BQ15173 497 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 ANKRD1Q15327 319 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 HIST2H2ACQ16777 129 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-208ENST00000625916 ADCK5Q3MIX3 580 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 ZNF667Q5HYK9 610 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 C1orf228Q6PIY5 440 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 RAD9BQ6WBX8 426 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 DHX40Q8IX18 779 aaKnown RBP2.69□□□□□ -1.98
SCN1A-208ENST00000625916 PCDH20Q8N6Y1 951 aaKnown RBP2.69□□□□□ -1.98
SCN1A-208ENST00000625916 DDHD1Q8NEL9 900 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 FGFBP3Q8TAT2 258 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 SLC38A5Q8WUX1 472 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 ORAI1Q96D31 301 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 TRIM51Q9BSJ1 452 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 FAM167BQ9BTA0 163 aa2.69□□□□□ -1.98
SCN1A-208ENST00000625916 HINT3Q9NQE9 182 aaKnown RBP2.69□□□□□ -1.98
SCN1A-208ENST00000625916 CACNG5Q9UF02 275 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms