RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ANKRD34CP0C6C1 535 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 RHOQP17081 205 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 ERCC5P28715 1186 aaPredicted RBP13.81□□□□□ -0.2
SNX1-214ENST00000625244 HHEXQ03014 270 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 PTK2Q05397 1052 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 ACOX1Q15067 660 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 CYTH1Q15438 398 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 CFAP58Q5T655 872 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 FAM72AQ5TYM5 149 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 MANEALQ5VSG8 457 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 FAM72DQ6L9T8 149 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 SPNS3Q6ZMD2 512 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 GDF7Q7Z4P5 450 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 FAM72BQ86X60 149 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 ZNF354CQ86Y25 554 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 IQCKQ8N0W5 287 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 CASKIN2Q8WXE0 1202 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 ZNF641Q96N77 438 aaPredicted RBP13.81□□□□□ -0.2
SNX1-214ENST00000625244 MAGEB5Q9BZ81 275 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 NEU3Q9UQ49 428 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 SLC17A4Q9Y2C5 497 aa13.81□□□□□ -0.2
SNX1-214ENST00000625244 SPAG6O75602 509 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 IVLP07476 585 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 HOXB4P17483 251 aaPredicted RBP13.8□□□□□ -0.2
SNX1-214ENST00000625244 ITGA3P26006 1051 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 PTGIRP43119 386 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 GFERP55789 205 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 CDK3Q00526 305 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 LAMB3Q13751 1172 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 IL11RAQ14626 422 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 TRNP1Q6NT89 227 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 DOK6Q6PKX4 331 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 BNIPLQ7Z465 357 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 PHLDB2Q86SQ0 1253 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 DNAAF5Q86Y56 855 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 HPS6Q86YV9 775 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 SEC14L1Q92503 715 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 CCDC34Q96HJ3 373 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 BARD1Q99728 777 aaKnown RBP13.8□□□□□ -0.2
SNX1-214ENST00000625244 TBC1D10AQ9BXI6 508 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 BRD8Q9H0E9 1235 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 NOL6Q9H6R4 1146 aaKnown RBP13.8□□□□□ -0.2
SNX1-214ENST00000625244 SYNCQ9H7C4 482 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 GDPD2Q9HCC8 539 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
SNX1-214ENST00000625244 OR12D3Q9UGF7 316 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 HPSEQ9Y251 543 aa13.8□□□□□ -0.2
SNX1-214ENST00000625244 TRIM49BA6NDI0 452 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 A6NL46 340 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 BECN2A8MW95 431 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 ZNF185O15231 689 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 TIAF1O95411 115 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 CMA1P23946 247 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 PTPN4P29074 926 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 FLT3P36888 993 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 PRCPP42785 496 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 SEPHS1P49903 392 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 PER3P56645 1201 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 CETN1Q12798 172 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 GRM3Q14832 879 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 RAB6CQ53S08 254 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 CRB2Q5IJ48 1285 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 FAM199XQ6PEV8 388 aaPredicted RBP13.79□□□□□ -0.2
SNX1-214ENST00000625244 DPPA4Q7L190 304 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 SYVN1Q86TM6 617 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 NUS1Q96E22 293 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 SCARF2Q96GP6 870 aaPredicted RBP13.79□□□□□ -0.2
SNX1-214ENST00000625244 C9orf72Q96LT7 481 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 COQ10AQ96MF6 247 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 OR2M4Q96R27 311 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 TSG101Q99816 390 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 GPR87Q9BY21 358 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 RAB6CQ9H0N0 254 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 SARS2Q9NP81 518 aaKnown RBP13.79□□□□□ -0.2
SNX1-214ENST00000625244 PCDHGC3Q9UN70 934 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 NTNG1Q9Y2I2 539 aa13.79□□□□□ -0.2
SNX1-214ENST00000625244 MN1Q10571 1320 aaPredicted RBP13.79□□□□□ -0.2
SNX1-214ENST00000625244 PCSK5Q92824 1860 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 P4HA2O15460 535 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 LRIG2O94898 1065 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 MT-ND3P03897 115 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 FGF5P12034 268 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 EPHA4P54764 986 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 NRG1Q02297 640 aaPredicted RBP13.78□□□□□ -0.2
SNX1-214ENST00000625244 PLXDC1Q8IUK5 500 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 MMP21Q8N119 569 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 CFAP57Q96MR6 1250 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 GBP4Q96PP9 640 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 SMAD5Q99717 465 aaKnown RBP13.78□□□□□ -0.2
SNX1-214ENST00000625244 RETREG1Q9H6L5 497 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 OSGIN2Q9Y236 505 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 TMEM98Q9Y2Y6 226 aa13.78□□□□□ -0.2
SNX1-214ENST00000625244 COPG1Q9Y678 874 aaKnown RBP13.78□□□□□ -0.2
SNX1-214ENST00000625244 SSU72P8A0A1W2PR75 194 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 FAM170AA1A519 330 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 RASA4BC9J798 803 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 RASA4O43374 803 aa13.77□□□□□ -0.21
SNX1-214ENST00000625244 PLEKP08567 350 aaPredicted RBP13.77□□□□□ -0.21
SNX1-214ENST00000625244 SNRPB2P08579 225 aaKnown RBP13.77□□□□□ -0.21
SNX1-214ENST00000625244 PTGER4P35408 488 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms