RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FAM155BO75949 473 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ATG7O95352 703 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 CLIC3O95833 236 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ENO3P13929 434 aaPredicted RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 GNA15P30679 374 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 EPHX2P34913 555 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ERVK-21P61565 698 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 MGAT3Q09327 533 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 POLD3Q15054 466 aaPredicted RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 CTF1Q16619 201 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 CATSPEREQ5SY80 951 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PPP1R26Q5T8A7 1209 aaPredicted RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 INTS11Q5TA45 600 aaKnown RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 TMEM65Q6PI78 240 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 DPH6Q7L8W6 267 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 VN1R5Q7Z5H4 357 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 OFCC1Q8IZS5 231 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 FBXO36Q8NEA4 188 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ST13P5Q8NFI4 369 aaPredicted RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 FBXW5Q969U6 566 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.22□□□□□ -0.77
VPS39-214ENST00000614932 WDR41Q9HAD4 459 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 EFCAB1Q9HAE3 211 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 SP110Q9HB58 689 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 NGRNQ9NPE2 291 aaKnown RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 B3GNT2Q9NY97 397 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 IPPQ9Y573 584 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 WDR81Q562E7 1941 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 A8MV72 311 aaPredicted RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 TRIM38O00635 465 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 KRT19P08727 400 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 IL7P13232 177 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 TSHRP16473 764 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 TCN1P20061 433 aaPredicted RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 UGT2B10P36537 528 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 NSFP46459 744 aaKnown RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 SLC1A6P48664 564 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 ARHGDIBP52566 201 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 MYL6P60660 151 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 LAMTOR4Q0VGL1 99 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 FBXO43Q4G163 708 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 ATF7IP2Q5U623 682 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 TTC39BQ5VTQ0 682 aaPredicted RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 CACHD1Q5VU97 1274 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 DPY19L3Q6ZPD9 716 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 SPATC1Q76KD6 591 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 GDPD3Q7L5L3 318 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 TLK2Q86UE8 772 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 CBR4Q8N4T8 237 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 OR7A2PQ8NGA2 310 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 URGCPQ8TCY9 931 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 SLCO4A1Q96BD0 722 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 ASB9Q96DX5 294 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 DUS3LQ96G46 650 aaKnown RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 MRPL40Q9NQ50 206 aaKnown RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 IARS2Q9NSE4 1012 aaKnown RBP10.21□□□□□ -0.77
VPS39-214ENST00000614932 SIRT5Q9NXA8 310 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 BAG5Q9UL15 447 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 GINS2Q9Y248 185 aa10.21□□□□□ -0.77
VPS39-214ENST00000614932 KRT87PA6NCN2 255 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 ZBBXA8MT70 800 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 GPR25O00155 361 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 PLD2O14939 933 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 PTP4A3O75365 173 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 MAFO75444 373 aaPredicted RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 APOA1P02647 267 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 TP53P04637 393 aaPredicted RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 TXNP10599 105 aaKnown RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 ETS1P14921 441 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 PCSK2P16519 638 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 ITGA2P17301 1181 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 IL10P22301 178 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 RAP1GAPP47736 663 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 SNRPFP62306 86 aaKnown RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 INCA1Q0VD86 236 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 CUL2Q13617 745 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 GALEQ14376 348 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 KCTD2Q14681 263 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 PLEKHG6Q3KR16 790 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 ATP13A4Q4VNC1 1196 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 LRRTM3Q86VH5 581 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 CDH26Q8IXH8 852 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 MICU2Q8IYU8 434 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 MCOLN2Q8IZK6 566 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 TAGAPQ8N103 731 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 TOP1MTQ969P6 601 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 MARK4Q96L34 752 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 DSN1Q9H410 356 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 MINDY3Q9H8M7 445 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 INTS7Q9NVH2 962 aaKnown RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 CNOT6Q9ULM6 557 aaKnown RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 MRPS7Q9Y2R9 242 aaKnown RBP10.21□□□□□ -0.78
VPS39-214ENST00000614932 RAD54BQ9Y620 910 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 LCTP09848 1927 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 LOXHD1Q8IVV2 1947 aa10.21□□□□□ -0.78
VPS39-214ENST00000614932 SOCS7O14512 581 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 CLEC2LP0C7M8 214 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 MTHFD1P11586 935 aaKnown RBP10.2□□□□□ -0.78
VPS39-214ENST00000614932 GZMAP12544 262 aa10.2□□□□□ -0.78
VPS39-214ENST00000614932 TCF4P15884 667 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms