RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CTNNB1P35222 781 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 NUMBP49757 651 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 MXRA7P84157 204 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 ARHGAP8P85298 464 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 RAD51Q06609 339 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 BCL2L1Q07817 233 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 LMAN2Q12907 356 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 USP4Q13107 963 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 PLEKHG6Q3KR16 790 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 SH2D4BQ5SQS7 431 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 GPR158Q5T848 1215 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 C6orf163Q5TEZ5 329 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 LYPLAL1Q5VWZ2 237 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 UGT3A1Q6NUS8 523 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 ZNF549Q6P9A3 640 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 LINGO4Q6UY18 593 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 CERS6Q6ZMG9 384 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 ATG14Q6ZNE5 492 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 RINLQ6ZS11 566 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 LDB1Q86U70 411 aaPredicted RBP11.24□□□□□ -0.61
LIG3-204ENST00000585740 BBS7Q8IWZ6 715 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 CCNYL1Q8N7R7 359 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 EFHBQ8N7U6 833 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 MRPL43Q8N983 215 aaKnown RBP11.24□□□□□ -0.61
LIG3-204ENST00000585740 FAM13CQ8NE31 585 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 HERVK_113Q902F9 699 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 ISG20Q96AZ6 181 aaKnown RBP11.24□□□□□ -0.61
LIG3-204ENST00000585740 L3HYPDHQ96EM0 354 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 NSMCE3Q96MG7 304 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 GPR63Q9BZJ6 419 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 DERL2Q9GZP9 239 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 ATP13A3Q9H7F0 1226 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 POLR3BQ9NW08 1133 aaPredicted RBP11.24□□□□□ -0.61
LIG3-204ENST00000585740 TAS2R1Q9NYW7 299 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 DPP7Q9UHL4 492 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 FCF1Q9Y324 198 aaKnown RBP11.24□□□□□ -0.61
LIG3-204ENST00000585740 ZNF711Q9Y462 761 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 SLC30A1Q9Y6M5 507 aa11.24□□□□□ -0.61
LIG3-204ENST00000585740 A0A1W2PQ67 120 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 UBA6A0AVT1 1052 aaPredicted RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 LCHNA4D1U4 455 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SYCE1LA8MT33 242 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 GRM6O15303 877 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 CCL16O15467 120 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 HTRA2O43464 458 aaPredicted RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 XYLBO75191 536 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 CIB2O75838 187 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 CHRNGP07510 517 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 POU2F2P09086 479 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 HNRNPA1P09651 372 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG3-204ENST00000585740 PKMP14618 531 aaKnown RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 TCF3P15923 654 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ZNF37AP17032 561 aaPredicted RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 NCF2P19878 526 aaPredicted RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 PGM1P36871 562 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ABL2P42684 1182 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 PTGER3P43115 390 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 RAP1GDS1P52306 607 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 COPAP53621 1224 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 PTPN5P54829 565 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ADARP55265 1226 aaKnown RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 SNRPD1P62314 119 aaKnown RBP11.23□□□□□ -0.61
LIG3-204ENST00000585740 ZXDBP98169 803 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 CACNG1Q06432 222 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SULT2A1Q06520 285 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SEMA3AQ14563 771 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 DMC1Q14565 340 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 PTPRCAPQ14761 206 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 GRIN2CQ14957 1233 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SLC9B1Q4ZJI4 515 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 TMEM240Q5SV17 173 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 PLPP4Q5VZY2 271 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ELMSAN1Q6PJG2 1045 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ISCA2Q86U28 154 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 APCDD1Q8J025 514 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 LSMEM2Q8N112 164 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 KDM1BQ8NB78 822 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SHKBP1Q8TBC3 707 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 WFDC5Q8TCV5 224 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SH3RF2Q8TEC5 729 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ANKRD49Q8WVL7 239 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 KIAA1191Q96A73 305 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SGF29Q96ES7 293 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 TUBGCP5Q96RT8 1024 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 MIPEPQ99797 713 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SLC46A2Q9BY10 475 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 CEP44Q9C0F1 390 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 TLR9Q9NR96 1032 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 IL17CQ9P0M4 197 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 TBC1D14Q9P2M4 693 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 ZDHHC2Q9UIJ5 367 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 FKBPLQ9UIM3 349 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 PCDHB9Q9Y5E1 797 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 PCDHB1Q9Y5F3 818 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SLC4A7Q9Y6M7 1214 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 SCN8AQ9UQD0 1980 aa11.23□□□□□ -0.61
LIG3-204ENST00000585740 GRID2O43424 1007 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 TLL1O43897 1013 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 ESR1P03372 595 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 RB1P06400 928 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms