RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 RRNAD1Q96FB5 475 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 METTL2AQ96IZ6 378 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 SERINC2Q96SA4 455 aa3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 SH3GL2Q99962 352 aa3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 PLSCR4Q9NRQ2 329 aa3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 CISD1Q9NZ45 108 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 OGFRQ9NZT2 677 aa3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 CWC15Q9P013 229 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 UBA2Q9UBT2 640 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 MORF4L1Q9UBU8 362 aa3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 CEPT1Q9Y6K0 416 aa3.8□□□□□ -1.8
SMCHD1-209ENST00000583441 TCERG1O14776 1098 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 ASAP2O43150 1006 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 ITM2AO43736 263 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 JRKO75564 520 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 NR2F1P10589 423 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 IL7RP16871 459 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 GABRB1P18505 474 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 GCH1P30793 250 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 NNMTP40261 264 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 EIF2DP41214 584 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 LMAN1P49257 510 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 CAMPP49913 170 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 P2RX3P56373 397 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 MRPS34P82930 218 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 NTRK2Q16620 822 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 PRTGQ2VWP7 1150 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 GGNBP1Q5YKI7 109 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 COLCA1Q6ZS62 124 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 GALNT5Q7Z7M9 940 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 TMTC2Q8N394 836 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 TMEM199Q8N511 208 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 TRIB2Q92519 343 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 INPP5DQ92835 1189 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 SLC25A28Q96A46 364 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 SAT2Q96F10 170 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 CAMK1GQ96NX5 476 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 C1QTNF5Q9BXJ0 243 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 POLDIP3Q9BY77 421 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 MRPL1Q9BYD6 325 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 TKTL2Q9H0I9 626 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 DDX4Q9NQI0 724 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 ANKEF1Q9NU02 776 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 TMEM51Q9NW97 253 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 CNOT8Q9UFF9 292 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 NRBP1Q9UHY1 535 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 RPS6KA6Q9UK32 745 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 STON1Q9Y6Q2 735 aa3.79□□□□□ -1.8
SMCHD1-209ENST00000583441 LOC100509620A0A075B734 347 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 A0A1W2PQ09 198 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 RPS10-NUDT3A0A1W2PQS6 291 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 H0YGN5 161 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 LDB2O43679 373 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PLOD3O60568 738 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 GPC4O75487 556 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 SOX30O94993 753 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 CSPG5O95196 566 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 HIST1H2ABP04908 130 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 NAGAP17050 411 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 HIST1H2ADP20671 130 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 MAOAP21397 527 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PON1P27169 355 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PRCPP42785 496 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 METAP2P50579 478 aaKnown RBP eCLIP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 GALCP54803 685 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 ROR2Q01974 943 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 IKQ13123 557 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 SF3B4Q15427 424 aaKnown RBP eCLIP3.78□□□□□ -1.87e-8■■■■□ 22.9
SMCHD1-209ENST00000583441 C15orf59Q2T9L4 293 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 ZNF284Q2VY69 593 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 NUGGCQ68CJ6 796 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 FBXO46Q6PJ61 603 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 TMCO3Q6UWJ1 677 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PQLC2Q6ZP29 291 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 MTSS1LQ765P7 747 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 DPPA4Q7L190 304 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 HIST3H2AQ7L7L0 130 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 SHFQ7M4L6 423 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 TICAM2Q86XR7 235 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 LSMEM1Q8N8F7 131 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 APOLD1Q96LR9 279 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 MEIS3Q99687 375 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PCGF1Q9BSM1 259 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PLK3Q9H4B4 646 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PLAC1Q9HBJ0 212 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 MKKSQ9NPJ1 570 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 HINT3Q9NQE9 182 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 ZBTB40Q9NUA8 1239 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 GIMAP4Q9NUV9 329 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 OR6C3Q9NZP0 311 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 MRPL15Q9P015 296 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 FBXL17Q9UF56 701 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 FBXW11Q9UKB1 542 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 PCDHGB4Q9UN71 923 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 MMP24Q9Y5R2 645 aa3.78□□□□□ -1.8
SMCHD1-209ENST00000583441 KANSL1LA0AUZ9 987 aa3.77□□□□□ -1.81
SMCHD1-209ENST00000583441 BTBD18B2RXH4 712 aa3.77□□□□□ -1.81
SMCHD1-209ENST00000583441 IFNL4K9M1U5 179 aa3.77□□□□□ -1.81
SMCHD1-209ENST00000583441 SPRY3O43610 288 aa3.77□□□□□ -1.81
SMCHD1-209ENST00000583441 BEST1O76090 585 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms