RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PTPRBP23467 1997 aa15□□□□□ -0.01
VPS39-210ENST00000568357 ARID1BQ8NFD5 2236 aaPredicted RBP15□□□□□ -0.01
VPS39-210ENST00000568357 ANKRD36A6QL64 1941 aa15□□□□□ -0.01
VPS39-210ENST00000568357 C1orf232A0A0U1RR37 186 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 GOLGA6CA6NDK9 693 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 GOLGA6BA6NDN3 693 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 HACD1B0YJ81 288 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 TNFRSF10CO14798 259 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 PMPCBO75439 489 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 SOD1P00441 154 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 TNFP01375 233 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 PRB1P04280 392 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CEACAM5P06731 702 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 ANXA6P08133 673 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 GOLGA6DP0CG33 693 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CDK4P11802 303 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 MYCLP1P12525 358 aaPredicted RBP14.99□□□□□ -0.01
VPS39-210ENST00000568357 CTSEP14091 401 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 NFKB1P19838 968 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 RBL1P28749 1068 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CDK3Q00526 305 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 OTUD4Q01804 1114 aaKnown RBP14.99□□□□□ -0.01
VPS39-210ENST00000568357 CDK18Q07002 472 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 XRCC4Q13426 336 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 NOMO1Q15155 1222 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 ELOCQ15369 112 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CCDC181Q5TID7 509 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 RAET1GQ6H3X3 334 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 PID1Q7Z2X4 250 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 NLRP8Q86W28 1048 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 SYCE1Q8N0S2 351 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 TXLNBQ8N3L3 684 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 GALNT15Q8N3T1 639 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 FSTL5Q8N475 847 aaPredicted RBP14.99□□□□□ -0.01
VPS39-210ENST00000568357 ACTL9Q8TC94 416 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 PTCD2Q8WV60 388 aaKnown RBP14.99□□□□□ -0.01
VPS39-210ENST00000568357 AP2M1Q96CW1 435 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CRELD1Q96HD1 420 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 WDR24Q96S15 920 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 FAM118BQ9BPY3 351 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 RIOK2Q9BVS4 552 aaKnown RBP14.99□□□□□ -0.01
VPS39-210ENST00000568357 BOCQ9BWV1 1114 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CCDC86Q9H6F5 360 aaKnown RBP14.99□□□□□ -0.01
VPS39-210ENST00000568357 CYP4F12Q9HCS2 524 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 GOLGA6AQ9NYA3 693 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 CAPN6Q9Y6Q1 641 aa14.99□□□□□ -0.01
VPS39-210ENST00000568357 F5H423 210 aaPredicted RBP14.98□□□□□ -0.01
VPS39-210ENST00000568357 H7C0C1 242 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 DDX3YO15523 660 aaKnown RBP14.98□□□□□ -0.01
VPS39-210ENST00000568357 MTSS1O43312 755 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 PIRTP0C851 137 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 KELP23276 732 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 TEAD1P28347 426 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 GPR1P46091 355 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 ATP5OP48047 213 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 POLD2P49005 469 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 CAMK2BQ13554 666 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 SLC14A2Q15849 920 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 C6orf132Q5T0Z8 1188 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 ZNF765Q7L2R6 523 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 TMPRSS12Q86WS5 348 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 NRSN1Q8IZ57 195 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 RNF10Q8N5U6 811 aaKnown RBP14.98□□□□□ -0.01
VPS39-210ENST00000568357 VAT1Q99536 393 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 FRMD8Q9BZ67 464 aaPredicted RBP14.98□□□□□ -0.01
VPS39-210ENST00000568357 TMEM168Q9H0V1 697 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 USP29Q9HBJ7 922 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 PHPT1Q9NRX4 125 aaPredicted RBP14.98□□□□□ -0.01
VPS39-210ENST00000568357 KLHL8Q9P2G9 620 aaPredicted RBP14.98□□□□□ -0.01
VPS39-210ENST00000568357 MOSPD1Q9UJG1 213 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 DNPEPQ9ULA0 475 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 MAST4O15021 2626 aa14.98□□□□□ -0.01
VPS39-210ENST00000568357 LOC285095A0A1B0GVY8 99 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 CPED1A4D0V7 1026 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 PDE2AO00408 941 aaPredicted RBP14.97□□□□□ -0.01
VPS39-210ENST00000568357 ARHGAP6O43182 974 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 JUPP14923 745 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 SPINT3P49223 89 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 DUSP3P51452 185 aaPredicted RBP14.97□□□□□ -0.01
VPS39-210ENST00000568357 WNT3AP56704 352 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 E2F1Q01094 437 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 INSM1Q01101 510 aaPredicted RBP14.97□□□□□ -0.01
VPS39-210ENST00000568357 HES3Q5TGS1 186 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 GUSBP11Q6P575 273 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 LVRNQ6Q4G3 990 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 KDELC1Q6UW63 502 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 ADAMTSL4Q6UY14 1074 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 LYSMD3Q7Z3D4 306 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 LRRC8AQ8IWT6 810 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 SLC35F3Q8IY50 421 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 RAVER1Q8IY67 606 aaKnown RBP14.97□□□□□ -0.01
VPS39-210ENST00000568357 UBL4BQ8N7F7 174 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 CCL4L1Q8NHW4 92 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 OXNAD1Q96HP4 312 aaPredicted RBP14.97□□□□□ -0.01
VPS39-210ENST00000568357 HES6Q96HZ4 224 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 MRGPRX2Q96LB1 330 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 FCRL5Q96RD9 977 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 MAGEE1Q9HCI5 957 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 FAM153AQ9UHL3 310 aa14.97□□□□□ -0.01
VPS39-210ENST00000568357 CNOT6Q9ULM6 557 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms