RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 OR1E3Q8WZA6 343 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 AP2M1Q96CW1 435 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 COX14Q96I36 57 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 WDR92Q96MX6 357 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 FERMT1Q9BQL6 677 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 FICDQ9BVA6 458 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 RIOK2Q9BVS4 552 aaKnown RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 FRMD8Q9BZ67 464 aaPredicted RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 SLC32A1Q9H598 525 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 ZFYVE1Q9HBF4 777 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 CNOT6Q9ULM6 557 aaKnown RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 SHOC2Q9UQ13 582 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 ZKSCAN5Q9Y2L8 839 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.77□□□□□ -0.85
CLK3-220ENST00000567992 PLXNB3Q9ULL4 1909 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 COL27A1Q8IZC6 1860 aaPredicted RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 LY6G6EA0A0G2JKS1 128 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 RGSL1A5PLK6 1076 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 FADS2P1A8MWK0 482 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 CACNB4O00305 520 aaPredicted RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 KIF5CO60282 957 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 CEP104O60308 925 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 USP12O75317 370 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 SLC4A1P02730 911 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 FUCA1P04066 466 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 CEACAM5P06731 702 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 ADRB1P08588 477 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 ETS1P14921 441 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 HK3P52790 923 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 DCDC1P59894 354 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 SRP54P61011 504 aaKnown RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 HNRNPKP61978 463 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLK3-220ENST00000567992 SNX1Q13596 522 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 TRIP6Q15654 476 aaKnown RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 PARP6Q2NL67 630 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 PROX2Q3B8N5 592 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 INAVAQ3KP66 663 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 FAXCQ5TGI0 409 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 ARHGEF18Q6ZSZ5 1173 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 GPR26Q8NDV2 337 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 OR4C6Q8NH72 309 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 COG1Q8WTW3 980 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 TSACCQ96A04 125 aaPredicted RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 MS4A14Q96JA4 679 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 TBATAQ96M53 351 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 APOL2Q9BQE5 337 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 FSD1LQ9BXM9 530 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 CLPBQ9H078 707 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 MRPL40Q9NQ50 206 aaKnown RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 SMARCAL1Q9NZC9 954 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 PKD2L2Q9NZM6 624 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 APOBEC3BQ9UH17 382 aaKnown RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 TTC7AQ9ULT0 858 aaPredicted RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 WASF3Q9UPY6 502 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 SLC17A4Q9Y2C5 497 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 AAR2Q9Y312 384 aaKnown RBP9.76□□□□□ -0.85
CLK3-220ENST00000567992 DGKBQ9Y6T7 804 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 U3KQA8 63 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 CHD8Q9HCK8 2581 aa9.76□□□□□ -0.85
CLK3-220ENST00000567992 GOLGA6CA6NDK9 693 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 GOLGA6BA6NDN3 693 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 H3BM21 787 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 TNFRSF10CO14798 259 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 SCAMP1O15126 338 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 FFAR2O15552 330 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 AQP9O43315 295 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 SIGLEC6O43699 453 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 FTH1P19P0C7X4 201 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 GOLGA6DP0CG33 693 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 BPIP17213 487 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 HTR1BP28222 390 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 PMLP29590 882 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 HMGCLP35914 325 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 GPR1P46091 355 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 SIM1P81133 766 aaPredicted RBP9.75□□□□□ -0.85
CLK3-220ENST00000567992 PPARDQ03181 441 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 SPARCL1Q14515 664 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 KCTD19Q17RG1 926 aaPredicted RBP9.75□□□□□ -0.85
CLK3-220ENST00000567992 LONRF2Q1L5Z9 754 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 PRRT3Q5FWE3 981 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 ENPP7Q6UWV6 458 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 SLCO6A1Q86UG4 719 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 TRIM74Q86UV6 250 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 HID1Q8IV36 788 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 TAB3Q8N5C8 712 aaPredicted RBP9.75□□□□□ -0.85
CLK3-220ENST00000567992 PDCD7Q8N8D1 485 aaKnown RBP9.75□□□□□ -0.85
CLK3-220ENST00000567992 OR56A4Q8NGH8 313 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 CCHCR1Q8TD31 782 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 BTN2A2Q8WVV5 523 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 PBKQ96KB5 322 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 PPP1R2P1Q96PQ5 205 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 SRPK1Q96SB4 655 aaKnown RBP9.75□□□□□ -0.85
CLK3-220ENST00000567992 OSBPL9Q96SU4 736 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 CDC6Q99741 560 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 TBL1YQ9BQ87 522 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 FAM83DQ9H4H8 585 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 TRABDQ9H4I3 376 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 ARNT2Q9HBZ2 717 aa9.75□□□□□ -0.85
CLK3-220ENST00000567992 PHPT1Q9NRX4 125 aaPredicted RBP9.75□□□□□ -0.85
CLK3-220ENST00000567992 KCND1Q9NSA2 647 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms