RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TBATAQ96M53 351 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 PPP1R2P1Q96PQ5 205 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 MCCC1Q96RQ3 725 aaPredicted RBP13.43□□□□□ -0.26
CLK3-218ENST00000566926 TRIM51Q9BSJ1 452 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 APOOQ9BUR5 198 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 DUSP23Q9BVJ7 150 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 TDRD1Q9BXT4 1180 aaKnown RBP13.43□□□□□ -0.26
CLK3-218ENST00000566926 SEPT10Q9P0V9 454 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 CSNK1G3Q9Y6M4 447 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 LRP4O75096 1905 aa13.43□□□□□ -0.26
CLK3-218ENST00000566926 A0A0J9YYE9 177 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 C5orf60A6NFR6 353 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 A8MX80 341 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 CACNB4O00305 520 aaPredicted RBP13.42□□□□□ -0.26
CLK3-218ENST00000566926 KCNN4O15554 427 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SDC3O75056 442 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 GCATO75600 419 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SEC31AO94979 1220 aaKnown RBP13.42□□□□□ -0.26
CLK3-218ENST00000566926 IFNB1P01574 187 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 TRBC1P01850 177 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 C1SP09871 688 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 JUNDP17535 347 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SEMG2Q02383 582 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 PPARDQ03181 441 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 ZBTB17Q13105 803 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 INPP5AQ14642 412 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 NFATC4Q14934 902 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 MORF4L2Q15014 288 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SLC14A2Q15849 920 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 CNGA3Q16281 694 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 TEX44Q53QW1 395 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 HOOK3Q86VS8 718 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 RAVER1Q8IY67 606 aaKnown RBP13.42□□□□□ -0.26
CLK3-218ENST00000566926 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLK3-218ENST00000566926 FAM71DQ8N9W8 422 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 OR4C6Q8NH72 309 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 LRRN4Q8WUT4 740 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 IFT81Q8WYA0 676 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 NUS1Q96E22 293 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 FMO2Q99518 471 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 FAM118BQ9BPY3 351 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 ADGRE3Q9BY15 652 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 FRMD8Q9BZ67 464 aaPredicted RBP13.42□□□□□ -0.26
CLK3-218ENST00000566926 SLC13A1Q9BZW2 595 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SLC25A51Q9H1U9 297 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 USP29Q9HBJ7 922 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 NLGN3Q9NZ94 848 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SPASTQ9UBP0 616 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 TRHDEQ9UKU6 1024 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 SHOC2Q9UQ13 582 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 CHKBQ9Y259 395 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 PCDHGA1Q9Y5H4 931 aa13.42□□□□□ -0.26
CLK3-218ENST00000566926 ARHGEF17Q96PE2 2063 aaPredicted RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 SCAMP1O15126 338 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 PCCBP05166 539 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 PDHA1P08559 390 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 HOXC4P09017 264 aaPredicted RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 ATXN1LP0C7T5 689 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 TSHRP16473 764 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 CKMT2P17540 419 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 CD86P42081 329 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 RPL21P46778 160 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 MRPS25P82663 173 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 NIPAL4Q0D2K0 466 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 GPS1Q13098 491 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 EIF2B5Q13144 721 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 ILKQ13418 452 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 ZNF542PQ5EBM4 170 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 FAXCQ5TGI0 409 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 ESRP1Q6NXG1 681 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 FBXO38Q6PIJ6 1188 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 RAB44Q7Z6P3 723 aaPredicted RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 SLCO6A1Q86UG4 719 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 SDR16C5Q8N3Y7 309 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 SLC25A45Q8N413 288 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 CNTD1Q8N815 330 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 AENQ8WTP8 325 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 ART4Q93070 314 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 CAVIN3Q969G5 261 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 COQ10AQ96MF6 247 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 SPATA13Q96N96 652 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 AGAP3Q96P47 875 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 SCNM1Q9BWG6 230 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 PHACTR1Q9C0D0 580 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 DPH5Q9H2P9 285 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 NCKIPSDQ9NZQ3 722 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 APOBEC3BQ9UH17 382 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 NFU1Q9UMS0 254 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 NEUROG3Q9Y4Z2 214 aa13.41□□□□□ -0.26
CLK3-218ENST00000566926 ZFC3H1O60293 1989 aaKnown RBP13.41□□□□□ -0.26
CLK3-218ENST00000566926 ESYT3A0FGR9 886 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 CAPN8A6NHC0 703 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 NPIPB15A6NHN6 443 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 GOLGA8CPA6NN73 597 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 DNALI1O14645 258 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 TPP1O14773 563 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 AQP9O43315 295 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ATP8B1O43520 1251 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 RASGRP1O95267 797 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 PYGLP06737 847 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms