RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CACNA1GO43497 2377 aa16.79■□□□□ 0.28
CLK3-210ENST00000563112 ZFHX4Q86UP3 3567 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 ANKRD66B4E2M5 251 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 NTN3O00634 580 aaPredicted RBP16.78■□□□□ 0.28
CLK3-210ENST00000563112 DXOO77932 396 aaKnown RBP16.78■□□□□ 0.28
CLK3-210ENST00000563112 LCA5LO95447 670 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 CLDN7O95471 211 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 RPLP0P05388 317 aaKnown RBP16.78■□□□□ 0.28
CLK3-210ENST00000563112 IVLP07476 585 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 NR2C2P49116 596 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 PCBP4P57723 403 aaKnown RBP16.78■□□□□ 0.28
CLK3-210ENST00000563112 ERVPABLB-1P60509 514 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 SKOR1P84550 965 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 ZBTB17Q13105 803 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 DOK6Q6PKX4 331 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 MFSD7Q6UXD7 560 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 NPNTQ6UXI9 565 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 RFLNAQ6ZTI6 216 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 NT5DC3Q86UY8 548 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 CNTD1Q8N815 330 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 EXD1Q8NHP7 514 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 CCL4L1Q8NHW4 92 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 WDR36Q8NI36 951 aaKnown RBP16.78■□□□□ 0.28
CLK3-210ENST00000563112 SCAMP4Q969E2 229 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 HIC2Q96JB3 615 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 RIOK2Q9BVS4 552 aaKnown RBP16.78■□□□□ 0.28
CLK3-210ENST00000563112 LRRN3Q9H3W5 708 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 THSD1Q9NS62 852 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 PKD2L2Q9NZM6 624 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 APPL1Q9UKG1 709 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 SATB2Q9UPW6 733 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 PCDHA13Q9Y5I0 950 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 IGSF10Q6WRI0 2623 aa16.78■□□□□ 0.28
CLK3-210ENST00000563112 CCDC187A0A096LP49 1063 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 C1orf232A0A0U1RR37 186 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 RGSL1A5PLK6 1076 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 ZW10O43264 779 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 NOBOXO60393 691 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 IPO7O95373 1038 aaKnown RBP16.77■□□□□ 0.28
CLK3-210ENST00000563112 MMP2P08253 660 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 PNLIPP16233 465 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 POLD2P49005 469 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 CCL7P80098 99 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 CCDC173Q0VFZ6 552 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 BIRC2Q13490 618 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 QPCTQ16769 361 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 CERCAMQ5T4B2 595 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 CCDC70Q6NSX1 233 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 Q8N9G6 341 aaPredicted RBP16.77■□□□□ 0.28
CLK3-210ENST00000563112 ZNF248Q8NDW4 579 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 ZDHHC1Q8WTX9 485 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 AGAP3Q96P47 875 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 OLFM3Q96PB7 478 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 CEP41Q9BYV8 373 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 STRADBQ9C0K7 418 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 CDH19Q9H159 772 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 SLC25A51Q9H1U9 297 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 FAM83DQ9H4H8 585 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 LRIT1Q9P2V4 623 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 RABGEF1Q9UJ41 708 aa16.77■□□□□ 0.28
CLK3-210ENST00000563112 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLK3-210ENST00000563112 ARHGEF17Q96PE2 2063 aaPredicted RBP16.77■□□□□ 0.27
CLK3-210ENST00000563112 UNC13CQ8NB66 2214 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 NUDT21O43809 227 aaKnown RBP16.76■□□□□ 0.27
CLK3-210ENST00000563112 ZRANB2O95218 330 aaKnown RBP eCLIP16.76■□□□□ 0.27
CLK3-210ENST00000563112 ASMTLO95671 621 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 FUCA1P04066 466 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 ITPKBP27987 946 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 ADCY8P40145 1251 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 CDKN2BP42772 138 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 ZNF75DP51815 510 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 CTBSQ01459 385 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 HLTFQ14527 1009 aaKnown RBP eCLIP16.76■□□□□ 0.27
CLK3-210ENST00000563112 KAZNQ674X7 775 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 FOXR1Q6PIV2 292 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 IGF2-ASQ6U949 168 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 SPOCD1Q6ZMY3 1216 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 NRROSQ86YC3 692 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 CCNJLQ8IV13 435 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 RCOR2Q8IZ40 523 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 ARL14Q8N4G2 192 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 IMP4Q96G21 291 aaKnown RBP16.76■□□□□ 0.27
CLK3-210ENST00000563112 MRFAP1L1Q96HT8 127 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 TMEM74Q96NL1 305 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 OR2M4Q96R27 311 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 SPATS2LQ9NUQ6 558 aaKnown RBP16.76■□□□□ 0.27
CLK3-210ENST00000563112 TAAR2Q9P1P5 351 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 TMEM98Q9Y2Y6 226 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 PCDHGA8Q9Y5G5 932 aa16.76■□□□□ 0.27
CLK3-210ENST00000563112 A0A0A6YYK5 440 aaPredicted RBP16.75■□□□□ 0.27
CLK3-210ENST00000563112 D6RAR5 112 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 INPP4BO15327 924 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 CST8O60676 142 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 SOD1P00441 154 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 FGF1P05230 155 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 AK4P27144 223 aaPredicted RBP16.75■□□□□ 0.27
CLK3-210ENST00000563112 MLLT3P42568 568 aaPredicted RBP16.75■□□□□ 0.27
CLK3-210ENST00000563112 SPINT3P49223 89 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 INHBCP55103 352 aa16.75■□□□□ 0.27
CLK3-210ENST00000563112 CDK18Q07002 472 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms