RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 HM13Q8TCT9 377 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 PRICKLE1Q96MT3 831 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 FCRL3Q96P31 734 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 KIFC1Q9BW19 673 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 WDR12Q9GZL7 423 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 C20orf27Q9GZN8 174 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 NXF3Q9H4D5 531 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 PPP2R3BQ9Y5P8 575 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 POMCP01189 267 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HIST1H2AGP0C0S8 130 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 ZNF12P17014 697 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HIST1H2ADP20671 130 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 ADCYAP1R1P41586 468 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 RPL38P63173 70 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 GRSF1Q12849 480 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP3-210ENST00000559192 TOP3AQ13472 1001 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 NCF4Q15080 339 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 DGKKQ5KSL6 1271 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 TREML2Q5T2D2 321 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 C9orf57Q5W0N0 161 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 PRR23CQ6ZRP0 262 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 RASSF6Q6ZTQ3 369 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 GET4Q7L5D6 327 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 STRADAQ7RTN6 431 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 THAP5Q7Z6K1 395 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 GPSM1Q86YR5 675 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 SETD9Q8NE22 299 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 ZHX1-C8orf76Q96EF9 292 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HIST1H2AHQ96KK5 128 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HSFY1Q96LI6 401 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 ASB2Q96Q27 587 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HIST1H2AJQ99878 128 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 H2AFJQ9BTM1 129 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 SOX17Q9H6I2 414 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 BPIFA1Q9NP55 256 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 TRMT13Q9NUP7 481 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 EHD3Q9NZN3 535 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 RABL2AQ9UBK7 228 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 VWA7Q9Y334 891 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 A0A0G2JPF8 293 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HNRNPCL3B7ZW38 293 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 TP73O15350 636 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HTRA2O43464 458 aaPredicted RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 DENRO43583 198 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 DLX3O60479 287 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 HNRNPCL4P0DMR1 293 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 SRP54P61011 504 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 CEACAM7Q14002 265 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 ARHGEF7Q14155 803 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 CCNYL2Q5T2Q4 361 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 UGT3A1Q6NUS8 523 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 KLHL35Q6PF15 583 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 PROSER1Q86XN7 944 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 ADHFE1Q8IWW8 467 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 TBC1D21Q8IYX1 336 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 S100ZQ8WXG8 99 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 TADA1Q96BN2 335 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 MNTQ99583 582 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 GPR20Q99678 358 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 DHRS4Q9BTZ2 278 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 EIF2B3Q9NR50 452 aaKnown RBP7.11□□□□□ -1.27
USP3-210ENST00000559192 GMPPBQ9Y5P6 360 aa7.11□□□□□ -1.27
USP3-210ENST00000559192 COL14A1Q05707 1796 aaKnown RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 RRN3P2A6NIE6 340 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 MSI1O43347 362 aaKnown RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 SH3BGRLO75368 114 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 ANXA6P08133 673 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 THRBP10828 461 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 PTPN9P43378 593 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 RENBPP51606 427 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 POLR2JP52435 117 aaKnown RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 PPIL2Q13356 520 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 STXBP5Q5T5C0 1151 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 KIAA1841Q6NSI8 718 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 FAM35AQ86V20 835 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 ANKRD13AQ8IZ07 590 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 CENPSQ8N2Z9 138 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 CPSF7Q8N684 471 aaKnown RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 ELMO1Q92556 727 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 DUSP16Q9BY84 665 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 STOML2Q9UJZ1 356 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 DUSP12Q9UNI6 340 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 ANKRD36CQ5JPF3 1778 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 MOXD2PA6NHM9 499 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 NPHS1O60500 1241 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 MSH3P20585 1137 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 CES1P23141 567 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 GLUD2P49448 558 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 HARS2P49590 506 aaKnown RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 MYBPC1Q00872 1141 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 SLC10A2Q12908 348 aaPredicted RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 HERC3Q15034 1050 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 USF2Q15853 346 aaPredicted RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 NEK5Q6P3R8 708 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 CHST15Q7LFX5 561 aaPredicted RBP7.1□□□□□ -1.27
USP3-210ENST00000559192 SHKBP1Q8TBC3 707 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 LRRC20Q8TCA0 184 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 PIGUQ9H490 435 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 ELOVL6Q9H5J4 265 aa7.1□□□□□ -1.27
USP3-210ENST00000559192 SUCOQ9UBS9 1254 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms