RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 MAB21L3Q8N8X9 362 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 PSPC1Q8WXF1 523 aaKnown RBP3.26□□□□□ -1.89
VRK1-202ENST00000553683 DNAAF4Q8WXU2 420 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 GTF3C6Q969F1 213 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 ABTB1Q969K4 478 aaPredicted RBP3.26□□□□□ -1.89
VRK1-202ENST00000553683 TAAR8Q969N4 342 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 PABPC5Q96DU9 382 aaKnown RBP3.26□□□□□ -1.89
VRK1-202ENST00000553683 TTC14Q96N46 770 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 UHRF2Q96PU4 802 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 CSF3RQ99062 836 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 LRRC1Q9BTT6 524 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 TKTL2Q9H0I9 626 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 MMP28Q9H239 520 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 MAGIXQ9H6Y5 334 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 DONSONQ9NYP3 566 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 DLGAP2Q9P1A6 1054 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 ABI3Q9P2A4 366 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 NAALADL1Q9UQQ1 740 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 LOXL2Q9Y4K0 774 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 PCDHAC2Q9Y5I4 1007 aa3.26□□□□□ -1.89
VRK1-202ENST00000553683 FAM237AA0A1B0GTK4 181 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 NPHP1O15259 732 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 SPINT2O43291 252 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 UMODP07911 640 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 G6PDP11413 515 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 ZNF23P17027 643 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 MMP14P50281 582 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 CASP6P55212 293 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 PDE1BQ01064 536 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 FOXM1Q08050 763 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 ARL16Q0P5N6 197 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 TBX2Q13207 712 aaPredicted RBP3.25□□□□□ -1.89
VRK1-202ENST00000553683 ADIPOQQ15848 244 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 EIF2S3LQ2VIR3 472 aaKnown RBP3.25□□□□□ -1.89
VRK1-202ENST00000553683 PAPPA-AS1Q5QFB9 102 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 CCNYL2Q5T2Q4 361 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 GFI1BQ5VTD9 330 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 RGMBQ6NW40 437 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 MMS22LQ6ZRQ5 1243 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 SMIM29Q86T20 159 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 NFE4Q86UQ8 179 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 TMEM219Q86XT9 240 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 HACE1Q8IYU2 909 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 ZUFSPQ96AP4 578 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 QRFPRQ96P65 431 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 ACOX2Q99424 681 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 SEC62Q99442 399 aaKnown RBP3.25□□□□□ -1.89
VRK1-202ENST00000553683 SIL1Q9H173 461 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 SLC25A18Q9H1K4 315 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 TCF7L2Q9NQB0 619 aa3.25□□□□□ -1.89
VRK1-202ENST00000553683 PDS5AQ29RF7 1337 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 EIF3CLB5ME19 914 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 LINC01565O15544 149 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 SEC31AO94979 1220 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 CCNDBP1O95273 360 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 SP1P08047 785 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 CDH2P19022 906 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 UBA1P22314 1058 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 DDIT3P35638 169 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 HOXA1P49639 335 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 RARSP54136 660 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 OLR1P78380 273 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 RELQ04864 619 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 CSTF3Q12996 717 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 ZNF234Q14588 700 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 ALG11Q2TAA5 492 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 DCST1Q5T197 706 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 ZNF704Q6ZNC4 412 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 DPPA4Q7L190 304 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 RNF168Q8IYW5 571 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 PCYOX1LQ8NBM8 494 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 SPATA20Q8TB22 786 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 ETNPPLQ8TBG4 499 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 METTL6Q8TCB7 284 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 RND1Q92730 232 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 SMARCE1Q969G3 411 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 PIGTQ969N2 578 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 RRP36Q96EU6 259 aaKnown RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 EPYCQ99645 322 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 SEPT5Q99719 369 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 SYT17Q9BSW7 474 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 C1QTNF5Q9BXJ0 243 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 ABCF3Q9NUQ8 709 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 C9orf78Q9NZ63 289 aaPredicted RBP3.24□□□□□ -1.89
VRK1-202ENST00000553683 PADI1Q9ULC6 663 aa3.24□□□□□ -1.89
VRK1-202ENST00000553683 A0A1W2PPH5 198 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 NPIPB15A6NHN6 443 aaPredicted RBP3.23□□□□□ -1.89
VRK1-202ENST00000553683 PRSS47A8MTI9 375 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 FAM72CH0Y354 149 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 KCNN4O15554 427 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 FGF17O60258 216 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 JRKO75564 520 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 CLEC3BP05452 202 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 CETPP11597 493 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 CDH1P12830 882 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 HLA-DOBP13765 273 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 UGT1A1P22309 533 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 ELF1P32519 619 aa3.23□□□□□ -1.89
VRK1-202ENST00000553683 GNL1P36915 607 aaPredicted RBP3.23□□□□□ -1.89
VRK1-202ENST00000553683 UBA7P41226 1012 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms